population_8hpp_source.html

#ifndef GENESIS_POPULATION_H_

#define GENESIS_POPULATION_H_


/*

    Genesis - A toolkit for working with phylogenetic data.

    Copyright (C) 2014-2022 Lucas Czech


    This program is free software: you can redistribute it and/or modify

    it under the terms of the GNU General Public License as published by

    the Free Software Foundation, either version 3 of the License, or

    (at your option) any later version.


    This program is distributed in the hope that it will be useful,

    but WITHOUT ANY WARRANTY; without even the implied warranty of

    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

    GNU General Public License for more details.


    You should have received a copy of the GNU General Public License

    along with this program.  If not, see <http://www.gnu.org/licenses/>.


    Contact:

    Lucas Czech <lczech@carnegiescience.edu>

    Department of Plant Biology, Carnegie Institution For Science

    260 Panama Street, Stanford, CA 94305, USA

*/


#include "genesis/population/base_counts.hpp"

#include "genesis/population/formats/bed_reader.hpp"

#include "genesis/population/formats/gff_reader.hpp"

#include "genesis/population/formats/hts_file.hpp"

#include "genesis/population/formats/sam_flags.hpp"

#include "genesis/population/formats/sam_variant_input_iterator.hpp"

#include "genesis/population/formats/simple_pileup_common.hpp"

#include "genesis/population/formats/simple_pileup_input_iterator.hpp"

#include "genesis/population/formats/simple_pileup_reader.hpp"

#include "genesis/population/formats/sync_common.hpp"

#include "genesis/population/formats/sync_input_iterator.hpp"

#include "genesis/population/formats/sync_reader.hpp"

#include "genesis/population/formats/variant_input_iterator.hpp"

#include "genesis/population/formats/variant_parallel_input_iterator.hpp"

#include "genesis/population/formats/vcf_common.hpp"

#include "genesis/population/formats/vcf_format_iterator.hpp"

#include "genesis/population/formats/vcf_header.hpp"

#include "genesis/population/formats/vcf_input_iterator.hpp"

#include "genesis/population/formats/vcf_record.hpp"

#include "genesis/population/functions/diversity.hpp"

#include "genesis/population/functions/filter_transform.hpp"

#include "genesis/population/functions/functions.hpp"

#include "genesis/population/functions/genome_heatmap.hpp"

#include "genesis/population/functions/genome_locus.hpp"

#include "genesis/population/functions/genome_region.hpp"

#include "genesis/population/functions/heatmap_colorization.hpp"

#include "genesis/population/functions/structure.hpp"

#include "genesis/population/genome_locus.hpp"

#include "genesis/population/genome_region.hpp"

#include "genesis/population/genome_region_list.hpp"

#include "genesis/population/variant.hpp"

#include "genesis/population/window/af_spectrum.hpp"

#include "genesis/population/window/base_window_iterator.hpp"

#include "genesis/population/window/functions.hpp"

#include "genesis/population/window/sliding_interval_window_iterator.hpp"

#include "genesis/population/window/sliding_window_generator.hpp"

#include "genesis/population/window/vcf_window.hpp"

#include "genesis/population/window/window.hpp"


#endif // include guard