genome_window_stream.hpp File Reference

#include "genesis/population/window/base_window_stream.hpp"
#include "genesis/population/window/window_view.hpp"
#include <cassert>
#include <functional>
#include <memory>
#include <stdexcept>
#include <string>
#include <type_traits>
#include <unordered_set>
#include <utility>

Go to the source code of this file.

Classes
class	GenomeWindowStream< InputStreamIterator, DataType >
	Stream for traversing the entire genome as a single window, with an inner WindowView iterator over the positions along the chromosomes. More...
class	GenomeWindowStream< InputStreamIterator, DataType >::DerivedIterator
	Internal iterator that produces WindowViews. More...

Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::population

Functions
template<class InputStreamIterator >
GenomeWindowStream< InputStreamIterator >	make_default_genome_window_stream (InputStreamIterator begin, InputStreamIterator end)
	Helper function to instantiate a GenomeWindowStream for the whole genome, for a default use case. More...
template<class InputStreamIterator , class DataType = typename InputStreamIterator::value_type>
GenomeWindowStream< InputStreamIterator, DataType >	make_genome_window_stream (InputStreamIterator begin, InputStreamIterator end)
	Helper function to instantiate a GenomeWindowStream for the whole genome, without the need to specify the template parameters manually. More...