subsample.hpp File Reference

#include "genesis/population/sample_counts.hpp"
#include "genesis/population/variant.hpp"

Go to the source code of this file.

Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::population

Functions
void	resample_counts (SampleCounts &sample, size_t target_depth)
	Resample all counts in a SampleCounts sample to a new target_depth. More...
void	resample_counts (Variant &variant, size_t target_depth)
	Resample all counts in a SampleCounts sample to a new target_depth. More...
void	rescale_counts (SampleCounts &sample, size_t target_depth)
	Transform a SampleCounts sample by re-scaling the base counts (A, C, G, T, as well as N and D) to sum up to max if max_depth is exceeded for the sample. More...
void	rescale_counts (Variant &variant, size_t target_depth)
	Transform a SampleCounts sample by re-scaling the base counts (A, C, G, T, as well as N and D) to sum up to max if max_depth is exceeded for the sample. More...
void	subsample_counts_with_replacement (SampleCounts &sample, size_t max_depth)
	Transform a SampleCounts sample by subsampling the nucleotide counts (A, C, G, T, as well as N and D) with replacement to sum up to max if max_depth is exceeded for the sample. More...
void	subsample_counts_with_replacement (Variant &variant, size_t max_depth)
	Transform a SampleCounts sample by subsampling the nucleotide counts (A, C, G, T, as well as N and D) with replacement to sum up to max if max_depth is exceeded for the sample. More...
void	subsample_counts_without_replacement (SampleCounts &sample, size_t max_depth)
	Transform a SampleCounts sample by subsampling the nucleotide counts (A, C, G, T, as well as N and D) without replacement to sum up to max if max_depth is exceeded for the sample. More...
void	subsample_counts_without_replacement (Variant &variant, size_t max_depth)
	Transform a SampleCounts sample by subsampling the nucleotide counts (A, C, G, T, as well as N and D) without replacement to sum up to max if max_depth is exceeded for the sample. More...
void	subscale_counts (SampleCounts &sample, size_t max_depth)
	Transform a SampleCounts sample by sub-scaling the base counts (A, C, G, T, as well as N and D) to sum up to max_depth if max_depth is exceeded for the sample. More...
void	subscale_counts (Variant &variant, size_t max_depth)
	Transform a SampleCounts sample by sub-scaling the base counts (A, C, G, T, as well as N and D) to sum up to max_depth if max_depth is exceeded for the sample. More...