A library for working with phylogenetic data.
v0.25.0
vcf_format_iterator.hpp File Reference
#include "genesis/population/formats/vcf_common.hpp"
#include "genesis/population/formats/vcf_header.hpp"
#include <cassert>
#include <cstdint>
#include <memory>
#include <stdexcept>
#include <string>
#include <vector>

Go to the source code of this file.

Classes

class  VcfFormatHelper
 Provide htslib helper functions. More...
 
class  VcfFormatIterator< S, T >
 Iterate the FORMAT information for the samples in a SNP/variant line in a VCF/BCF file. More...
 
class  VcfFormatIterator< S, T >
 Iterate the FORMAT information for the samples in a SNP/variant line in a VCF/BCF file. More...
 

Namespaces

 genesis
 Container namespace for all symbols of genesis in order to keep them separate when used as a library.
 
 genesis::population
 

Typedefs

using VcfFormatIteratorFloat = VcfFormatIterator< float, double >
 
using VcfFormatIteratorGenotype = VcfFormatIterator< int32_t, VcfGenotype >
 
using VcfFormatIteratorInt = VcfFormatIterator< int32_t, int32_t >
 
using VcfFormatIteratorString = VcfFormatIterator< char *, std::string >