sample_counts_filter_positional.hpp File Reference

#include "genesis/population/sample_counts.hpp"
#include "genesis/population/filter/sample_counts_filter.hpp"
#include "genesis/population/function/genome_region.hpp"
#include "genesis/population/genome_locus_set.hpp"
#include "genesis/population/genome_region.hpp"
#include "genesis/population/variant.hpp"
#include <functional>
#include <memory>
#include <stdexcept>
#include <string>
#include <utility>
#include <vector>

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Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::population

Functions
template<class GenomeMaskType >
std::function< void(Variant &)>	make_sample_counts_filter_by_region_tagging (std::vector< std::shared_ptr< GenomeMaskType >> const &sample_masks, SampleCountsFilterTag tag, bool complement=false)
	Filter function to be used with VariantInputStream on a Variant to filter its SampleCounts by genome regions, by tagging non-covered positions with the given tag. More...