variant_filter_numerical.hpp File Reference

#include "genesis/population/sample_counts.hpp"
#include "genesis/population/filter/sample_counts_filter_numerical.hpp"
#include "genesis/population/filter/sample_counts_filter.hpp"
#include "genesis/population/filter/variant_filter.hpp"
#include "genesis/population/variant.hpp"
#include <functional>
#include <iosfwd>
#include <memory>
#include <stdexcept>
#include <string>
#include <utility>
#include <vector>

Go to the source code of this file.

Classes
struct	VariantFilterNumericalParams

Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::population

Functions
bool	apply_variant_filter_numerical (Variant &variant, VariantFilterNumericalParams const &params)
	Filter a given Variant based on the numerical properties of the counts. More...
bool	apply_variant_filter_numerical (Variant &variant, VariantFilterNumericalParams const &params, VariantFilterStats &stats)
	Filter a given Variant based on the numerical properties of the counts. More...
std::function< bool(Variant &)>	make_variant_filter_numerical_excluding (VariantFilterNumericalParams const &params)
	Return a functional to numerically filter Variants in an VariantInputStream, excluding the ones that do not pass the filters. More...
std::function< bool(Variant &)>	make_variant_filter_numerical_excluding (VariantFilterNumericalParams const &params, VariantFilterStats &stats)
	Return a functional to numerically filter Variants in an VariantInputStream, excluding the ones that do not pass the filters. More...
std::function< void(Variant &)>	make_variant_filter_numerical_tagging (SampleCountsFilterNumericalParams const &sample_count_params, VariantFilterNumericalParams const &variant_params, bool all_need_pass=false)
	Return a functional to numerically filter Variants in an VariantInputStream, tagging the ones that do not pass the filters. More...
std::function< void(Variant &)>	make_variant_filter_numerical_tagging (SampleCountsFilterNumericalParams const &sample_count_params, VariantFilterNumericalParams const &variant_params, VariantFilterStats &variant_stats, SampleCountsFilterStats &sample_count_stats, bool all_need_pass=false)
	Return a functional to numerically filter Variants in an VariantInputStream, tagging the ones that do not pass the filters. More...
std::function< void(Variant &)>	make_variant_filter_numerical_tagging (VariantFilterNumericalParams const &params)
	Return a functional to numerically filter Variants in an VariantInputStream, tagging the ones that do not pass the filters. More...
std::function< void(Variant &)>	make_variant_filter_numerical_tagging (VariantFilterNumericalParams const &params, VariantFilterStats &stats)
	Return a functional to numerically filter Variants in an VariantInputStream, tagging the ones that do not pass the filters. More...