variant_filter_positional.hpp File Reference

#include "genesis/population/sample_counts.hpp"
#include "genesis/population/filter/variant_filter.hpp"
#include "genesis/population/function/genome_region.hpp"
#include "genesis/population/genome_locus_set.hpp"
#include "genesis/population/genome_region.hpp"
#include "genesis/population/variant.hpp"
#include <functional>
#include <iosfwd>
#include <memory>
#include <stdexcept>
#include <string>
#include <utility>
#include <vector>

Go to the source code of this file.

Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::population

Functions
std::function< bool(Variant const &)>	make_variant_filter_by_region_excluding (GenomeRegion const &region, bool complement=false)
	Filter function to be used with VariantInputStream to filter by a genome region, by excluding non-covered positions from the stream. More...
std::function< bool(Variant const &)>	make_variant_filter_by_region_excluding (std::shared_ptr< GenomeLocusSet > loci, bool complement=false)
	Filter function to be used with VariantInputStream to filter by a list of genome regions, by excluding non-covered positions from the stream. More...
std::function< bool(Variant const &)>	make_variant_filter_by_region_excluding (std::shared_ptr< GenomeRegionList > regions, bool complement=false)
	Filter function to be used with VariantInputStream to filter by a list of genome regions, by excluding non-covered positions from the stream. More...
std::function< void(Variant &)>	make_variant_filter_by_region_tagging (GenomeRegion const &region, VariantFilterTag tag, bool complement=false)
	Filter function to be used with VariantInputStream to filter by a genome region, by tagging non-covered positions with the given tag. More...
std::function< void(Variant &)>	make_variant_filter_by_region_tagging (std::shared_ptr< GenomeLocusSet > loci, VariantFilterTag tag, bool complement=false)
	Filter function to be used with VariantInputStream to filter by a list of genome regions, by tagging non-covered positions with the given tag. More...
std::function< void(Variant &)>	make_variant_filter_by_region_tagging (std::shared_ptr< GenomeRegionList > regions, VariantFilterTag tag, bool complement=false)
	Filter function to be used with VariantInputStream to filter by a list of genome regions, by tagging non-covered positions with the given tag. More...