queue_window_stream.hpp File Reference

#include "genesis/population/window/base_window_stream.hpp"
#include "genesis/population/window/window_view_stream.hpp"
#include "genesis/population/window/window_view.hpp"
#include "genesis/population/window/window.hpp"
#include <cassert>
#include <deque>
#include <functional>
#include <stdexcept>
#include <string>
#include <tuple>
#include <type_traits>
#include <utility>

Go to the source code of this file.

Classes
class	QueueWindowStream< InputStreamIterator, DataType >
	Stream for Windows contaiing a queue of entries, i.e., sliding Windows of a fixed number of selected positions in a genome. More...
class	QueueWindowStream< InputStreamIterator, DataType >::DerivedIterator
	Internal iterator that produces Windows. More...

Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::population

Functions
template<class InputStreamIterator >
QueueWindowStream< InputStreamIterator >	make_default_queue_window_stream (InputStreamIterator begin, InputStreamIterator end, size_t count=0, size_t stride=0)
	Helper function to instantiate a QueueWindowStream for a default use case. More...
template<class InputStreamIterator >
WindowViewStream< InputStreamIterator >	make_default_queue_window_view_stream (InputStreamIterator begin, InputStreamIterator end, size_t count, size_t stride=0)
	Helper class that creates a QueueWindowStream with default functors and wraps it in a WindowViewStream. More...
template<class InputStreamIterator >
QueueWindowStream< InputStreamIterator >	make_passing_variant_queue_window_stream (InputStreamIterator begin, InputStreamIterator end, size_t count=0, size_t stride=0)
	Helper function to instantiate a QueueWindowStream for a default use case with underlying data of type Variant, where only Variants with passing status are selected. More...
template<class InputStreamIterator >
WindowViewStream< InputStreamIterator >	make_passing_variant_queue_window_view_stream (InputStreamIterator begin, InputStreamIterator end, size_t count, size_t stride=0)
	Helper class that creates a QueueWindowStream with default functions for Variant data, and wraps it in a WindowViewStream. More...
template<class InputStreamIterator , class DataType = typename InputStreamIterator::value_type>
QueueWindowStream< InputStreamIterator, DataType >	make_queue_window_stream (InputStreamIterator begin, InputStreamIterator end, size_t count=0, size_t stride=0)
	Helper function to instantiate a QueueWindowStream without the need to specify the template parameters manually. More...