diversity_pool_calculator.hpp File Reference

#include "genesis/population/filter/sample_counts_filter.hpp"
#include "genesis/population/function/diversity_pool_functions.hpp"
#include "genesis/population/function/functions.hpp"
#include "genesis/population/variant.hpp"
#include "genesis/utils/math/compensated_sum.hpp"
#include <cassert>
#include <cmath>
#include <cstdint>
#include <iterator>
#include <limits>
#include <stdexcept>
#include <string>
#include <type_traits>
#include <utility>
#include <vector>

Go to the source code of this file.

Classes
class	DiversityPoolCalculator
	Compute Theta Pi, Theta Watterson, and Tajia's D in their pool-sequencing corrected versions according to Kofler et al. More...
struct	DiversityPoolCalculator::Result
	Data struct to collect all diversity statistics computed here. More...

Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::population