vcf_window.hpp File Reference

#include <cassert>
#include <functional>
#include <string>
#include <vector>
#include "genesis/population/formats/vcf_input_iterator.hpp"
#include "genesis/population/formats/vcf_record.hpp"
#include "genesis/population/window/sliding_window_generator.hpp"
#include "genesis/population/window/window.hpp"

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Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::population

Functions
template<class Data , class Accumulator = EmptyAccumulator>
void	run_vcf_window (SlidingWindowGenerator< Data, Accumulator > &generator, std::string const &vcf_file, std::function< Data(VcfRecord const &)> conversion, std::function< bool(VcfRecord const &)> condition={})
	Convenience function to iterate over a whole VCF file. More...