region_window_stream.hpp File Reference

#include "genesis/population/genome_locus.hpp"
#include "genesis/population/genome_region_list.hpp"
#include "genesis/population/genome_region.hpp"
#include "genesis/population/window/base_window_stream.hpp"
#include "genesis/population/window/window_view_stream.hpp"
#include "genesis/population/window/window_view.hpp"
#include "genesis/population/window/window.hpp"
#include "genesis/utils/containers/range.hpp"
#include <cassert>
#include <deque>
#include <functional>
#include <memory>
#include <stdexcept>
#include <string>
#include <type_traits>
#include <unordered_set>
#include <utility>
#include <vector>

Go to the source code of this file.

Classes
class	RegionWindowStream< InputStreamIterator, DataType >
	Stream for Windows representing regions of a genome. More...
class	RegionWindowStream< InputStreamIterator, DataType >::DerivedIterator
	Internal iterator that produces Windows. More...

Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::population

Functions
template<class InputStreamIterator >
RegionWindowStream< InputStreamIterator >	make_default_region_window_stream (InputStreamIterator begin, InputStreamIterator end, std::shared_ptr< GenomeRegionList > region_list)
	Helper function to instantiate a RegionWindowStream for a default use case. More...
template<class InputStreamIterator >
WindowViewStream< InputStreamIterator >	make_default_region_window_view_stream (InputStreamIterator begin, InputStreamIterator end, std::shared_ptr< GenomeRegionList > region_list)
	Helper class that creates a RegionWindowStream and wraps it in a WindowViewStream. More...
template<class InputStreamIterator , class DataType = typename InputStreamIterator::value_type>
RegionWindowStream< InputStreamIterator, DataType >	make_region_window_stream (InputStreamIterator begin, InputStreamIterator end, std::shared_ptr< GenomeRegionList > region_list)
	Helper function to instantiate a RegionWindowStream without the need to specify the template parameters manually. More...