A toolkit for working with phylogenetic data.
v0.24.0
utils.hpp File Reference
#include "genesis/utils/containers/dataframe.hpp"
#include "genesis/utils/containers/dataframe/operators.hpp"
#include "genesis/utils/containers/dataframe/reader.hpp"
#include "genesis/utils/containers/deref_iterator.hpp"
#include "genesis/utils/containers/matrix/col.hpp"
#include "genesis/utils/containers/matrix.hpp"
#include "genesis/utils/containers/matrix/operators.hpp"
#include "genesis/utils/containers/matrix/reader.hpp"
#include "genesis/utils/containers/matrix/row.hpp"
#include "genesis/utils/containers/matrix/writer.hpp"
#include "genesis/utils/containers/mru_cache.hpp"
#include "genesis/utils/core/algorithm.hpp"
#include "genesis/utils/core/exception.hpp"
#include "genesis/utils/core/fs.hpp"
#include "genesis/utils/core/logging.hpp"
#include "genesis/utils/core/options.hpp"
#include "genesis/utils/core/range.hpp"
#include "genesis/utils/core/std.hpp"
#include "genesis/utils/core/version.hpp"
#include "genesis/utils/formats/bmp/writer.hpp"
#include "genesis/utils/formats/csv/input_iterator.hpp"
#include "genesis/utils/formats/csv/reader.hpp"
#include "genesis/utils/formats/json/document.hpp"
#include "genesis/utils/formats/json/iterator.hpp"
#include "genesis/utils/formats/json/reader.hpp"
#include "genesis/utils/formats/json/writer.hpp"
#include "genesis/utils/formats/nexus/block.hpp"
#include "genesis/utils/formats/nexus/document.hpp"
#include "genesis/utils/formats/nexus/taxa.hpp"
#include "genesis/utils/formats/nexus/trees.hpp"
#include "genesis/utils/formats/nexus/writer.hpp"
#include "genesis/utils/formats/svg/attributes.hpp"
#include "genesis/utils/formats/svg/color_bar.hpp"
#include "genesis/utils/formats/svg/definitions.hpp"
#include "genesis/utils/formats/svg/document.hpp"
#include "genesis/utils/formats/svg/gradient.hpp"
#include "genesis/utils/formats/svg/group.hpp"
#include "genesis/utils/formats/svg/helper.hpp"
#include "genesis/utils/formats/svg/image.hpp"
#include "genesis/utils/formats/svg/matrix.hpp"
#include "genesis/utils/formats/svg/object.hpp"
#include "genesis/utils/formats/svg/shapes.hpp"
#include "genesis/utils/formats/svg/svg.hpp"
#include "genesis/utils/formats/svg/text.hpp"
#include "genesis/utils/formats/xml/document.hpp"
#include "genesis/utils/formats/xml/helper.hpp"
#include "genesis/utils/formats/xml/writer.hpp"
#include "genesis/utils/io/base_input_source.hpp"
#include "genesis/utils/io/base_output_target.hpp"
#include "genesis/utils/io/char.hpp"
#include "genesis/utils/io/deserializer.hpp"
#include "genesis/utils/io/file_input_source.hpp"
#include "genesis/utils/io/file_output_target.hpp"
#include "genesis/utils/io/gzip.hpp"
#include "genesis/utils/io/gzip_input_source.hpp"
#include "genesis/utils/io/gzip_output_target.hpp"
#include "genesis/utils/io/gzip_stream.hpp"
#include "genesis/utils/io/input_buffer.hpp"
#include "genesis/utils/io/input_reader.hpp"
#include "genesis/utils/io/input_source.hpp"
#include "genesis/utils/io/input_stream.hpp"
#include "genesis/utils/io/output_stream.hpp"
#include "genesis/utils/io/output_target.hpp"
#include "genesis/utils/io/parser.hpp"
#include "genesis/utils/io/scanner.hpp"
#include "genesis/utils/io/serializer.hpp"
#include "genesis/utils/io/stream_input_source.hpp"
#include "genesis/utils/io/stream_output_target.hpp"
#include "genesis/utils/io/strict_fstream.hpp"
#include "genesis/utils/io/string_input_source.hpp"
#include "genesis/utils/io/string_output_target.hpp"
#include "genesis/utils/math/bitvector.hpp"
#include "genesis/utils/math/bitvector/operators.hpp"
#include "genesis/utils/math/common.hpp"
#include "genesis/utils/math/distance.hpp"
#include "genesis/utils/math/euclidean_kmeans.hpp"
#include "genesis/utils/math/histogram/accumulator.hpp"
#include "genesis/utils/math/histogram/distances.hpp"
#include "genesis/utils/math/histogram.hpp"
#include "genesis/utils/math/histogram/operations.hpp"
#include "genesis/utils/math/histogram/operators.hpp"
#include "genesis/utils/math/histogram/stats.hpp"
#include "genesis/utils/math/kmeans.hpp"
#include "genesis/utils/math/matrix.hpp"
#include "genesis/utils/math/mds.hpp"
#include "genesis/utils/math/pca.hpp"
#include "genesis/utils/math/random.hpp"
#include "genesis/utils/math/range_minimum_query.hpp"
#include "genesis/utils/math/ranking.hpp"
#include "genesis/utils/math/regression/dataframe.hpp"
#include "genesis/utils/math/regression/factor.hpp"
#include "genesis/utils/math/regression/family.hpp"
#include "genesis/utils/math/regression/glm.hpp"
#include "genesis/utils/math/regression/helper.hpp"
#include "genesis/utils/math/regression/link.hpp"
#include "genesis/utils/math/regression/slr.hpp"
#include "genesis/utils/math/statistics.hpp"
#include "genesis/utils/math/twobit_vector/functions.hpp"
#include "genesis/utils/math/twobit_vector.hpp"
#include "genesis/utils/math/twobit_vector/iterator_deletions.hpp"
#include "genesis/utils/math/twobit_vector/iterator_insertions.hpp"
#include "genesis/utils/math/twobit_vector/iterator_substitutions.hpp"
#include "genesis/utils/text/convert.hpp"
#include "genesis/utils/text/string.hpp"
#include "genesis/utils/text/style.hpp"
#include "genesis/utils/text/table.hpp"
#include "genesis/utils/tools/char_lookup.hpp"
#include "genesis/utils/tools/color/functions.hpp"
#include "genesis/utils/tools/color/helpers.hpp"
#include "genesis/utils/tools/color.hpp"
#include "genesis/utils/tools/color/list_diverging.hpp"
#include "genesis/utils/tools/color/list_misc.hpp"
#include "genesis/utils/tools/color/list_qualitative.hpp"
#include "genesis/utils/tools/color/list_sequential.hpp"
#include "genesis/utils/tools/color/map.hpp"
#include "genesis/utils/tools/color/names.hpp"
#include "genesis/utils/tools/color/normalization.hpp"
#include "genesis/utils/tools/color/norm_boundary.hpp"
#include "genesis/utils/tools/color/norm_diverging.hpp"
#include "genesis/utils/tools/color/norm_linear.hpp"
#include "genesis/utils/tools/color/norm_logarithmic.hpp"
#include "genesis/utils/tools/date_time.hpp"
#include "genesis/utils/tools/geodesy/functions.hpp"
#include "genesis/utils/tools/geodesy/geo_coordinate.hpp"
#include "genesis/utils/tools/hash/functions.hpp"
#include "genesis/utils/tools/hash/md5.hpp"
#include "genesis/utils/tools/hash/sha1.hpp"
#include "genesis/utils/tools/hash/sha256.hpp"
#include "genesis/utils/tools/tickmarks.hpp"

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