A library for working with phylogenetic and population genetic data.
v0.27.0
base_input_source.hpp
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1 #ifndef GENESIS_UTILS_IO_BASE_INPUT_SOURCE_H_
2 #define GENESIS_UTILS_IO_BASE_INPUT_SOURCE_H_
3 
4 /*
5  Genesis - A toolkit for working with phylogenetic data.
6  Copyright (C) 2014-2018 Lucas Czech and HITS gGmbH
7 
8  This program is free software: you can redistribute it and/or modify
9  it under the terms of the GNU General Public License as published by
10  the Free Software Foundation, either version 3 of the License, or
11  (at your option) any later version.
12 
13  This program is distributed in the hope that it will be useful,
14  but WITHOUT ANY WARRANTY; without even the implied warranty of
15  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
16  GNU General Public License for more details.
17 
18  You should have received a copy of the GNU General Public License
19  along with this program. If not, see <http://www.gnu.org/licenses/>.
20 
21  Contact:
22  Lucas Czech <lucas.czech@h-its.org>
23  Exelixis Lab, Heidelberg Institute for Theoretical Studies
24  Schloss-Wolfsbrunnenweg 35, D-69118 Heidelberg, Germany
25 */
26 
35 
36 #include <string>
37 
38 namespace genesis {
39 namespace utils {
40 
41 // =================================================================================================
42 // Base Input Source
43 // =================================================================================================
44 
51 {
52 public:
53 
54  // -------------------------------------------------------------
55  // Constructors and Rule of Five
56  // -------------------------------------------------------------
57 
58  BaseInputSource() = default;
59 
60  BaseInputSource( BaseInputSource const& ) = default;
61  BaseInputSource( BaseInputSource&& ) = default;
62 
63  BaseInputSource& operator= ( BaseInputSource const& ) = default;
65 
66  virtual ~BaseInputSource()
67  {}
68 
69  // -------------------------------------------------------------
70  // Members
71  // -------------------------------------------------------------
72 
76  size_t read( char* buffer, size_t size )
77  {
78  // Non-virtual interface.
79  return read_( buffer, size );
80  }
81 
85  std::string source_name() const
86  {
87  // Non-virtual interface.
88  return source_name_();
89  }
90 
95  std::string source_string() const
96  {
97  // Non-virtual interface.
98  return source_string_();
99  }
100 
101  // -------------------------------------------------------------
102  // Internal Members
103  // -------------------------------------------------------------
104 
105 private:
106 
107  virtual size_t read_( char* buffer, size_t size ) = 0;
108 
109  virtual std::string source_name_() const = 0;
110  virtual std::string source_string_() const = 0;
111 
112 };
113 
114 } // namespace utils
115 } // namespace genesis
116 
117 #endif // include guard
genesis::utils::BaseInputSource::BaseInputSource
BaseInputSource()=default
fs.hpp
Provides functions for accessing the file system.
genesis::utils::BaseInputSource::source_name
std::string source_name() const
Get a name of the input source. This is intended for user output.
Definition: base_input_source.hpp:85
genesis
Container namespace for all symbols of genesis in order to keep them separate when used as a library.
Definition: placement/formats/edge_color.cpp:42
genesis::utils::BaseInputSource::operator=
BaseInputSource & operator=(BaseInputSource const &)=default
genesis::utils::BaseInputSource::source_string
std::string source_string() const
Get a string representing the input source. This is intended for the reader classes,...
Definition: base_input_source.hpp:95
genesis::utils::BaseInputSource::~BaseInputSource
virtual ~BaseInputSource()
Definition: base_input_source.hpp:66
genesis::utils::BaseInputSource
Abstract base class for reading byte data from input sources.
Definition: base_input_source.hpp:50
genesis::utils::BaseInputSource::read
size_t read(char *buffer, size_t size)
Read size many bytes into the char buffer.
Definition: base_input_source.hpp:76