utils/math/twobit_vector/functions.hpp

Go to the documentation of this file.

#ifndef GENESIS_UTILS_MATH_TWOBIT_VECTOR_FUNCTIONS_H_
#define GENESIS_UTILS_MATH_TWOBIT_VECTOR_FUNCTIONS_H_
 
/*
    Genesis - A toolkit for working with phylogenetic data.
    Copyright (C) 2014-2017 Lucas Czech
 
    This program is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.
 
    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.
 
    You should have received a copy of the GNU General Public License
    along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
    Contact:
    Lucas Czech <lucas.czech@h-its.org>
    Exelixis Lab, Heidelberg Institute for Theoretical Studies
    Schloss-Wolfsbrunnenweg 35, D-69118 Heidelberg, Germany
*/
 
#include "genesis/utils/math/twobit_vector.hpp"
 
#include <string>
 
namespace genesis {
namespace utils {
 
// =================================================================================================
//     Strings
// =================================================================================================
 
TwobitVector::ValueType translate_from_nucleic_acid( char site );
char                    translate_to_nucleic_acid( TwobitVector::ValueType value );
 
TwobitVector from_nucleic_acids( std::string const& sequence );
std::string to_nucleic_acids( TwobitVector const& vec );
 
std::string bitstring( TwobitVector const& vec );
std::string bitstring( TwobitVector::WordType const& vec );
 
} // namespace utils
} // namespace genesis
 
#endif // include guard