A library for working with phylogenetic and population genetic data.
v0.32.0
gzip_block_ostream.hpp
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1 #ifndef GENESIS_UTILS_IO_GZIP_BLOCK_OSTREAM_H_
2 #define GENESIS_UTILS_IO_GZIP_BLOCK_OSTREAM_H_
3 
4 /*
5  Genesis - A toolkit for working with phylogenetic data.
6  Copyright (C) 2014-2024 Lucas Czech
7 
8  This program is free software: you can redistribute it and/or modify
9  it under the terms of the GNU General Public License as published by
10  the Free Software Foundation, either version 3 of the License, or
11  (at your option) any later version.
12 
13  This program is distributed in the hope that it will be useful,
14  but WITHOUT ANY WARRANTY; without even the implied warranty of
15  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
16  GNU General Public License for more details.
17 
18  You should have received a copy of the GNU General Public License
19  along with this program. If not, see <http://www.gnu.org/licenses/>.
20 
21  Contact:
22  Lucas Czech <lucas.czech@h-its.org>
23  Exelixis Lab, Heidelberg Institute for Theoretical Studies
24  Schloss-Wolfsbrunnenweg 35, D-69118 Heidelberg, Germany
25 */
26 
37 
38 #include <memory>
39 #include <sstream>
40 #include <string>
41 
42 namespace genesis {
43 namespace utils {
44 
45 // ================================================================================================
46 // Gzip Block Output Stream
47 // ================================================================================================
48 
90  : public std::ostream
91 {
92 public:
93 
94  explicit GzipBlockOStream(
95  std::ostream& os,
96  std::size_t block_size = GZIP_DEFAULT_BLOCK_SIZE,
98  std::shared_ptr<ThreadPool> thread_pool = nullptr
99  );
100 
101  explicit GzipBlockOStream(
102  std::streambuf* sbuf_p,
103  std::size_t block_size = GZIP_DEFAULT_BLOCK_SIZE,
105  std::shared_ptr<ThreadPool> thread_pool = nullptr
106  );
107 
108  virtual ~GzipBlockOStream();
109 
110  static const std::size_t GZIP_DEFAULT_BLOCK_SIZE = 1ul << 16;
111 };
112 
113 } // namespace utils
114 } // namespace genesis
115 
116 #endif // include guard
genesis::utils::GzipBlockOStream::~GzipBlockOStream
virtual ~GzipBlockOStream()
Definition: gzip_block_ostream.cpp:700
genesis::utils::GzipBlockOStream::GZIP_DEFAULT_BLOCK_SIZE
static const std::size_t GZIP_DEFAULT_BLOCK_SIZE
Definition: gzip_block_ostream.hpp:110
gzip.hpp
genesis::utils::GzipCompressionLevel
GzipCompressionLevel
List of possible compression levels used for GzipOStream.
Definition: gzip_stream.hpp:100
gzip_stream.hpp
genesis::utils::GzipBlockOStream
Output stream that writes blocks of gzip-compressed data to an underlying wrapped stream,...
Definition: gzip_block_ostream.hpp:89
genesis
Container namespace for all symbols of genesis in order to keep them separate when used as a library.
Definition: placement/formats/edge_color.cpp:42
genesis::utils::GzipCompressionLevel::kDefaultCompression
@ kDefaultCompression
thread_pool.hpp
genesis::utils::GzipBlockOStream::GzipBlockOStream
GzipBlockOStream(std::ostream &os, std::size_t block_size=GZIP_DEFAULT_BLOCK_SIZE, GzipCompressionLevel compression_level=GzipCompressionLevel::kDefaultCompression, std::shared_ptr< ThreadPool > thread_pool=nullptr)
Definition: gzip_block_ostream.cpp:673