A library for working with phylogenetic and population genetic data.
v0.27.0
gzip_block_ostream.hpp
Go to the documentation of this file.
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#ifndef GENESIS_UTILS_IO_GZIP_BLOCK_OSTREAM_H_
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#define GENESIS_UTILS_IO_GZIP_BLOCK_OSTREAM_H_
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/*
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Genesis - A toolkit for working with phylogenetic data.
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Copyright (C) 2014-2020 Lucas Czech
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This program is free software: you can redistribute it and/or modify
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it under the terms of the GNU General Public License as published by
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the Free Software Foundation, either version 3 of the License, or
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(at your option) any later version.
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This program is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.
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You should have received a copy of the GNU General Public License
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along with this program. If not, see <http://www.gnu.org/licenses/>.
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Contact:
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Lucas Czech <lucas.czech@h-its.org>
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Exelixis Lab, Heidelberg Institute for Theoretical Studies
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Schloss-Wolfsbrunnenweg 35, D-69118 Heidelberg, Germany
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*/
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#include "
genesis/utils/io/gzip.hpp
"
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#include "
genesis/utils/io/gzip_stream.hpp
"
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#include <fstream>
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#include <sstream>
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#include <string>
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namespace
genesis
{
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namespace
utils {
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// ================================================================================================
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// Gzip Block Output Stream
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// ================================================================================================
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class
GzipBlockOStream
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:
public
std::ostream
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{
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public
:
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explicit
GzipBlockOStream
(
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std::ostream& os,
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std::size_t block_size =
GZIP_DEFAULT_BLOCK_SIZE
,
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GzipCompressionLevel
compression_level =
GzipCompressionLevel::kDefaultCompression
,
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std::size_t num_threads = 0
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);
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explicit
GzipBlockOStream
(
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std::streambuf* sbuf_p,
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std::size_t block_size =
GZIP_DEFAULT_BLOCK_SIZE
,
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GzipCompressionLevel
compression_level =
GzipCompressionLevel::kDefaultCompression
,
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std::size_t num_threads = 0
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);
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virtual
~GzipBlockOStream
();
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static
const
std::size_t
GZIP_DEFAULT_BLOCK_SIZE
= 1ul << 16;
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};
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}
// namespace utils
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}
// namespace genesis
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#endif // include guard
genesis::utils::GzipBlockOStream::~GzipBlockOStream
virtual ~GzipBlockOStream()
Definition:
gzip_block_ostream.cpp:738
genesis::utils::GzipBlockOStream::GZIP_DEFAULT_BLOCK_SIZE
static const std::size_t GZIP_DEFAULT_BLOCK_SIZE
Definition:
gzip_block_ostream.hpp:111
gzip.hpp
genesis::utils::GzipCompressionLevel
GzipCompressionLevel
List of possible compression levels used for GzipOStream.
Definition:
gzip_stream.hpp:100
gzip_stream.hpp
genesis::utils::GzipBlockOStream
Output stream that writes blocks of gzip-compressed data to an underlying wrapped stream,...
Definition:
gzip_block_ostream.hpp:90
genesis
Container namespace for all symbols of genesis in order to keep them separate when used as a library.
Definition:
placement/formats/edge_color.cpp:42
genesis::utils::GzipCompressionLevel::kDefaultCompression
@ kDefaultCompression
genesis::utils::GzipBlockOStream::GzipBlockOStream
GzipBlockOStream(std::ostream &os, std::size_t block_size=GZIP_DEFAULT_BLOCK_SIZE, GzipCompressionLevel compression_level=GzipCompressionLevel::kDefaultCompression, std::size_t num_threads=0)
Definition:
gzip_block_ostream.cpp:706
lib
genesis
utils
io
gzip_block_ostream.hpp
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