utils_8hpp_source.html

#ifndef GENESIS_UTILS_H_

#define GENESIS_UTILS_H_


/*

    Genesis - A toolkit for working with phylogenetic data.

    Copyright (C) 2014-2024 Lucas Czech


    This program is free software: you can redistribute it and/or modify

    it under the terms of the GNU General Public License as published by

    the Free Software Foundation, either version 3 of the License, or

    (at your option) any later version.


    This program is distributed in the hope that it will be useful,

    but WITHOUT ANY WARRANTY; without even the implied warranty of

    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

    GNU General Public License for more details.


    You should have received a copy of the GNU General Public License

    along with this program.  If not, see <http://www.gnu.org/licenses/>.


    Contact:

    Lucas Czech <lucas.czech@sund.ku.dk>

    University of Copenhagen, Globe Institute, Section for GeoGenetics

    Oster Voldgade 5-7, 1350 Copenhagen K, Denmark

*/


#include "genesis/utils/color/color.hpp"

#include "genesis/utils/color/functions.hpp"

#include "genesis/utils/color/heat_map.hpp"

#include "genesis/utils/color/helpers.hpp"

#include "genesis/utils/color/list_diverging.hpp"

#include "genesis/utils/color/list_misc.hpp"

#include "genesis/utils/color/list_qualitative.hpp"

#include "genesis/utils/color/list_sequential.hpp"

#include "genesis/utils/color/map.hpp"

#include "genesis/utils/color/names.hpp"

#include "genesis/utils/color/normalization.hpp"

#include "genesis/utils/color/norm_boundary.hpp"

#include "genesis/utils/color/norm_diverging.hpp"

#include "genesis/utils/color/norm_linear.hpp"

#include "genesis/utils/color/norm_logarithmic.hpp"

#include "genesis/utils/containers/dataframe.hpp"

#include "genesis/utils/containers/dataframe/operators.hpp"

#include "genesis/utils/containers/dataframe/reader.hpp"

#include "genesis/utils/containers/deref_iterator.hpp"

#include "genesis/utils/containers/filter_iterator.hpp"

#include "genesis/utils/containers/function_cache.hpp"

#include "genesis/utils/containers/generic_input_stream.hpp"

#include "genesis/utils/containers/hash_tuple.hpp"

#include "genesis/utils/containers/interval_tree/functions.hpp"

#include "genesis/utils/containers/interval_tree/fwd.hpp"

#include "genesis/utils/containers/interval_tree.hpp"

#include "genesis/utils/containers/interval_tree/interval.hpp"

#include "genesis/utils/containers/interval_tree/iterator.hpp"

#include "genesis/utils/containers/interval_tree/node.hpp"

#include "genesis/utils/containers/matrix/col.hpp"

#include "genesis/utils/containers/matrix.hpp"

#include "genesis/utils/containers/matrix/operators.hpp"

#include "genesis/utils/containers/matrix/reader.hpp"

#include "genesis/utils/containers/matrix/row.hpp"

#include "genesis/utils/containers/matrix/simple_reader.hpp"

#include "genesis/utils/containers/matrix/writer.hpp"

#include "genesis/utils/containers/mru_cache.hpp"

#include "genesis/utils/containers/optional.hpp"

#include "genesis/utils/containers/range.hpp"

#include "genesis/utils/containers/transform_iterator.hpp"

#include "genesis/utils/core/algorithm.hpp"

#include "genesis/utils/core/exception.hpp"

#include "genesis/utils/core/fs.hpp"

#include "genesis/utils/core/info.hpp"

#include "genesis/utils/core/logging.hpp"

#include "genesis/utils/core/options.hpp"

#include "genesis/utils/core/std.hpp"

#include "genesis/utils/core/version.hpp"

#include "genesis/utils/formats/bmp/writer.hpp"

#include "genesis/utils/formats/csv/input_iterator.hpp"

#include "genesis/utils/formats/csv/reader.hpp"

#include "genesis/utils/formats/json/document.hpp"

#include "genesis/utils/formats/json/iterator.hpp"

#include "genesis/utils/formats/json/reader.hpp"

#include "genesis/utils/formats/json/writer.hpp"

#include "genesis/utils/formats/nexus/block.hpp"

#include "genesis/utils/formats/nexus/document.hpp"

#include "genesis/utils/formats/nexus/taxa.hpp"

#include "genesis/utils/formats/nexus/trees.hpp"

#include "genesis/utils/formats/nexus/writer.hpp"

#include "genesis/utils/formats/svg/attributes.hpp"

#include "genesis/utils/formats/svg/axis.hpp"

#include "genesis/utils/formats/svg/color_bar.hpp"

#include "genesis/utils/formats/svg/definitions.hpp"

#include "genesis/utils/formats/svg/document.hpp"

#include "genesis/utils/formats/svg/gradient.hpp"

#include "genesis/utils/formats/svg/group.hpp"

#include "genesis/utils/formats/svg/helper.hpp"

#include "genesis/utils/formats/svg/image.hpp"

#include "genesis/utils/formats/svg/matrix.hpp"

#include "genesis/utils/formats/svg/object.hpp"

#include "genesis/utils/formats/svg/pie_chart.hpp"

#include "genesis/utils/formats/svg/shapes.hpp"

#include "genesis/utils/formats/svg/svg.hpp"

#include "genesis/utils/formats/svg/text.hpp"

#include "genesis/utils/formats/xml/document.hpp"

#include "genesis/utils/formats/xml/helper.hpp"

#include "genesis/utils/formats/xml/writer.hpp"

#include "genesis/utils/io/base64.hpp"

#include "genesis/utils/io/base_input_source.hpp"

#include "genesis/utils/io/base_output_target.hpp"

#include "genesis/utils/io/deserializer.hpp"

#include "genesis/utils/io/file_input_source.hpp"

#include "genesis/utils/io/file_output_target.hpp"

#include "genesis/utils/io/gzip_block_ostream.hpp"

#include "genesis/utils/io/gzip.hpp"

#include "genesis/utils/io/gzip_input_source.hpp"

#include "genesis/utils/io/gzip_output_target.hpp"

#include "genesis/utils/io/gzip_stream.hpp"

#include "genesis/utils/io/input_buffer.hpp"

#include "genesis/utils/io/input_reader.hpp"

#include "genesis/utils/io/input_source.hpp"

#include "genesis/utils/io/input_stream.hpp"

#include "genesis/utils/io/output_stream.hpp"

#include "genesis/utils/io/output_target.hpp"

#include "genesis/utils/io/parser.hpp"

#include "genesis/utils/io/scanner.hpp"

#include "genesis/utils/io/serializer.hpp"

#include "genesis/utils/io/stream_input_source.hpp"

#include "genesis/utils/io/stream_output_target.hpp"

#include "genesis/utils/io/strict_fstream.hpp"

#include "genesis/utils/io/string_input_source.hpp"

#include "genesis/utils/io/string_output_target.hpp"

#include "genesis/utils/math/binomial.hpp"

#include "genesis/utils/math/bitvector/helper.hpp"

#include "genesis/utils/math/bitvector.hpp"

#include "genesis/utils/math/bitvector/operators.hpp"

#include "genesis/utils/math/common.hpp"

#include "genesis/utils/math/compensated_sum.hpp"

#include "genesis/utils/math/correlation.hpp"

#include "genesis/utils/math/distance.hpp"

#include "genesis/utils/math/distribution.hpp"

#include "genesis/utils/math/euclidean_kmeans.hpp"

#include "genesis/utils/math/histogram/accumulator.hpp"

#include "genesis/utils/math/histogram/distances.hpp"

#include "genesis/utils/math/histogram.hpp"

#include "genesis/utils/math/histogram/operations.hpp"

#include "genesis/utils/math/histogram/operators.hpp"

#include "genesis/utils/math/histogram/stats.hpp"

#include "genesis/utils/math/kmeans.hpp"

#include "genesis/utils/math/matrix.hpp"

#include "genesis/utils/math/mds.hpp"

#include "genesis/utils/math/moments.hpp"

#include "genesis/utils/math/pca.hpp"

#include "genesis/utils/math/random.hpp"

#include "genesis/utils/math/range_minimum_query.hpp"

#include "genesis/utils/math/ranking.hpp"

#include "genesis/utils/math/regression/dataframe.hpp"

#include "genesis/utils/math/regression/factor.hpp"

#include "genesis/utils/math/regression/family.hpp"

#include "genesis/utils/math/regression/glm.hpp"

#include "genesis/utils/math/regression/helper.hpp"

#include "genesis/utils/math/regression/link.hpp"

#include "genesis/utils/math/regression/slr.hpp"

#include "genesis/utils/math/statistics.hpp"

#include "genesis/utils/math/twobit_vector/functions.hpp"

#include "genesis/utils/math/twobit_vector.hpp"

#include "genesis/utils/math/twobit_vector/iterator_deletions.hpp"

#include "genesis/utils/math/twobit_vector/iterator_insertions.hpp"

#include "genesis/utils/math/twobit_vector/iterator_substitutions.hpp"

#include "genesis/utils/text/char.hpp"

#include "genesis/utils/text/convert.hpp"

#include "genesis/utils/text/string.hpp"

#include "genesis/utils/text/style.hpp"

#include "genesis/utils/text/table.hpp"

#include "genesis/utils/threading/blocking_concurrent_queue.hpp"

#include "genesis/utils/threading/concurrent_queue.hpp"

#include "genesis/utils/threading/lightweight_semaphore.hpp"

#include "genesis/utils/threading/multi_future.hpp"

#include "genesis/utils/threading/sequential_output_buffer.hpp"

#include "genesis/utils/threading/thread_functions.hpp"

#include "genesis/utils/threading/thread_pool.hpp"

#include "genesis/utils/threading/threadsafe_queue.hpp"

#include "genesis/utils/tools/char_lookup.hpp"

#include "genesis/utils/tools/date_time.hpp"

#include "genesis/utils/tools/geodesy/functions.hpp"

#include "genesis/utils/tools/geodesy/geo_coordinate.hpp"

#include "genesis/utils/tools/hash/functions.hpp"

#include "genesis/utils/tools/hash/md5.hpp"

#include "genesis/utils/tools/hash/sha1.hpp"

#include "genesis/utils/tools/hash/sha256.hpp"

#include "genesis/utils/tools/tickmarks.hpp"


#endif // include guard