utils/math/regression/helper.hpp

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#ifndef GENESIS_UTILS_MATH_REGRESSION_HELPER_H_
#define GENESIS_UTILS_MATH_REGRESSION_HELPER_H_
 
/*
    Genesis - A toolkit for working with phylogenetic data.
    Copyright (C) 2014-2020 Lucas Czech and HITS gGmbH
 
    This program is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.
 
    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.
 
    You should have received a copy of the GNU General Public License
    along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
    Contact:
    Lucas Czech <lucas.czech@h-its.org>
    Exelixis Lab, Heidelberg Institute for Theoretical Studies
    Schloss-Wolfsbrunnenweg 35, D-69118 Heidelberg, Germany
*/
 
#include <cstddef>
#include <vector>
 
namespace genesis {
namespace utils {
 
// =================================================================================================
//     Linear Algebra Helper Functions
// =================================================================================================
 
struct GlmFreedom
{
    size_t valid_entries = 0;
 
    size_t empty_strata = 0;
 
    size_t max_stratum = 1;
 
    long degrees_of_freedom( size_t rank ) const
    {
        auto const vi = static_cast<long>( valid_entries );
        auto const mi = static_cast<long>( max_stratum );
        auto const ei = static_cast<long>( empty_strata );
        auto const ri = static_cast<long>( rank );
 
        return vi - mi + ei - ri;
    }
};
 
GlmFreedom weighted_mean_centering(
    std::vector<double> const& y_input,
    std::vector<double> const& weights,
    std::vector<size_t> const& strata,
    bool                       with_intercept,
    bool                       centering,
    std::vector<double>&       y_output
);
 
double weighted_residuals(
    std::vector<double> const& x_input,
    std::vector<double> const& y_input,
    std::vector<double> const& weights,
    std::vector<double>&       y_output
);
 
double weighted_sum_of_squares(
    std::vector<double> const& x_input,
    std::vector<double> const& weights = std::vector<double>{}
);
 
double weighted_inner_product(
    std::vector<double> const& x_input,
    std::vector<double> const& y_input,
    std::vector<double> const& weights = std::vector<double>{}
);
 
double weighted_sum(
    std::vector<double> const& x_input,
    std::vector<double> const& weights = std::vector<double>{}
);
 
} // namespace utils
} // namespace genesis
 
#endif // include guard