tree_8hpp_source.html

#ifndef GENESIS_TREE_H_

#define GENESIS_TREE_H_


/*

    Genesis - A toolkit for working with phylogenetic data.

    Copyright (C) 2014-2024 Lucas Czech


    This program is free software: you can redistribute it and/or modify

    it under the terms of the GNU General Public License as published by

    the Free Software Foundation, either version 3 of the License, or

    (at your option) any later version.


    This program is distributed in the hope that it will be useful,

    but WITHOUT ANY WARRANTY; without even the implied warranty of

    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

    GNU General Public License for more details.


    You should have received a copy of the GNU General Public License

    along with this program.  If not, see <http://www.gnu.org/licenses/>.


    Contact:

    Lucas Czech <lucas.czech@sund.ku.dk>

    University of Copenhagen, Globe Institute, Section for GeoGenetics

    Oster Voldgade 5-7, 1350 Copenhagen K, Denmark

*/


#include "genesis/tree/attribute_tree/indexed_newick_reader.hpp"

#include "genesis/tree/attribute_tree/keyed_newick_reader.hpp"

#include "genesis/tree/attribute_tree/tree.hpp"

#include "genesis/tree/bipartition/bipartition.hpp"

#include "genesis/tree/bipartition/functions.hpp"

#include "genesis/tree/bipartition/rf.hpp"

#include "genesis/tree/common_tree/distances.hpp"

#include "genesis/tree/common_tree/edge_color.hpp"

#include "genesis/tree/common_tree/functions.hpp"

#include "genesis/tree/common_tree/newick_reader.hpp"

#include "genesis/tree/common_tree/newick_writer.hpp"

#include "genesis/tree/common_tree/operators.hpp"

#include "genesis/tree/common_tree/phyloxml_writer.hpp"

#include "genesis/tree/common_tree/tree.hpp"

#include "genesis/tree/drawing/circular_layout.hpp"

#include "genesis/tree/drawing/functions.hpp"

#include "genesis/tree/drawing/heat_tree.hpp"

#include "genesis/tree/drawing/layout_base.hpp"

#include "genesis/tree/drawing/layout_tree.hpp"

#include "genesis/tree/drawing/rectangular_layout.hpp"

#include "genesis/tree/formats/color_writer_plugin.hpp"

#include "genesis/tree/formats/newick/broker.hpp"

#include "genesis/tree/formats/newick/color_writer_plugin.hpp"

#include "genesis/tree/formats/newick/element.hpp"

#include "genesis/tree/formats/newick/input_iterator.hpp"

#include "genesis/tree/formats/newick/reader.hpp"

#include "genesis/tree/formats/newick/simple_reader.hpp"

#include "genesis/tree/formats/newick/simple_tree.hpp"

#include "genesis/tree/formats/newick/simple_writer.hpp"

#include "genesis/tree/formats/newick/writer.hpp"

#include "genesis/tree/formats/phyloxml/color_writer_plugin.hpp"

#include "genesis/tree/formats/phyloxml/writer.hpp"

#include "genesis/tree/formats/table/reader.hpp"

#include "genesis/tree/function/distances.hpp"

#include "genesis/tree/function/functions.hpp"

#include "genesis/tree/function/lca_lookup.hpp"

#include "genesis/tree/function/manipulation.hpp"

#include "genesis/tree/function/operators.hpp"

#include "genesis/tree/function/tree_set.hpp"

#include "genesis/tree/iterator/eulertour.hpp"

#include "genesis/tree/iterator/levelorder.hpp"

#include "genesis/tree/iterator/node_links.hpp"

#include "genesis/tree/iterator/path.hpp"

#include "genesis/tree/iterator/path_set.hpp"

#include "genesis/tree/iterator/postorder.hpp"

#include "genesis/tree/iterator/preorder.hpp"

#include "genesis/tree/mass_tree/balances.hpp"

#include "genesis/tree/mass_tree/emd.hpp"

#include "genesis/tree/mass_tree/functions.hpp"

#include "genesis/tree/mass_tree/kmeans.hpp"

#include "genesis/tree/mass_tree/phylo_factor_colors.hpp"

#include "genesis/tree/mass_tree/phylo_factor.hpp"

#include "genesis/tree/mass_tree/phylo_ilr.hpp"

#include "genesis/tree/mass_tree/squash_clustering.hpp"

#include "genesis/tree/mass_tree/tree.hpp"

#include "genesis/tree/printer/compact.hpp"

#include "genesis/tree/printer/detailed.hpp"

#include "genesis/tree/printer/table.hpp"

#include "genesis/tree/tree/edge_data.hpp"

#include "genesis/tree/tree/edge.hpp"

#include "genesis/tree/tree.hpp"

#include "genesis/tree/tree/link.hpp"

#include "genesis/tree/tree/node_data.hpp"

#include "genesis/tree/tree/node.hpp"

#include "genesis/tree/tree_set.hpp"

#include "genesis/tree/tree/subtree.hpp"


#endif // include guard