A library for working with phylogenetic and population genetic data.
v0.27.0
tree.hpp
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1 #ifndef GENESIS_TREE_H_
2 #define GENESIS_TREE_H_
3 
4 /*
5  Genesis - A toolkit for working with phylogenetic data.
6  Copyright (C) 2014-2022 Lucas Czech
7 
8  This program is free software: you can redistribute it and/or modify
9  it under the terms of the GNU General Public License as published by
10  the Free Software Foundation, either version 3 of the License, or
11  (at your option) any later version.
12 
13  This program is distributed in the hope that it will be useful,
14  but WITHOUT ANY WARRANTY; without even the implied warranty of
15  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
16  GNU General Public License for more details.
17 
18  You should have received a copy of the GNU General Public License
19  along with this program. If not, see <http://www.gnu.org/licenses/>.
20 
21  Contact:
22  Lucas Czech <lczech@carnegiescience.edu>
23  Department of Plant Biology, Carnegie Institution For Science
24  260 Panama Street, Stanford, CA 94305, USA
25 */
26 
95 #include "genesis/tree/tree.hpp"
101 
102 #endif // include guard
emd.hpp
color_writer_plugin.hpp
broker.hpp
phylo_factor.hpp
edge_data.hpp
writer.hpp
tree.hpp
functions.hpp
CommonTree functions.
newick_reader.hpp
squash_clustering.hpp
circular_layout.hpp
node.hpp
simple_tree.hpp
balances.hpp
eulertour.hpp
node_data.hpp
tree.hpp
Header of Tree class.
element.hpp
tree_set.hpp
functions.hpp
tree_set.hpp
phylo_ilr.hpp
layout_base.hpp
kmeans.hpp
color_writer_plugin.hpp
input_iterator.hpp
distances.hpp
Header of CommonTree distance methods.
tree.hpp
compact.hpp
subtree.hpp
color_writer_plugin.hpp
operators.hpp
functions.hpp
newick_writer.hpp
edge.hpp
phylo_factor_colors.hpp
rectangular_layout.hpp
bipartition.hpp
writer.hpp
manipulation.hpp
operators.hpp
Tree operator functions.
simple_writer.hpp
rf.hpp
tree.hpp
detailed.hpp
simple_reader.hpp
phyloxml_writer.hpp
functions.hpp
reader.hpp
edge_color.hpp
heat_tree.hpp
postorder.hpp
functions.hpp
layout_tree.hpp
levelorder.hpp
distances.hpp
Header of Tree distance methods.
path.hpp
lca_lookup.hpp
keyed_newick_reader.hpp
path_set.hpp
indexed_newick_reader.hpp
preorder.hpp
table.hpp