tree/drawing/functions.hpp File Reference

#include "genesis/tree/common_tree/tree.hpp"
#include "genesis/tree/drawing/layout_base.hpp"
#include "genesis/utils/tools/color.hpp"
#include "genesis/utils/tools/color/map.hpp"
#include "genesis/utils/tools/color/normalization.hpp"
#include "genesis/utils/formats/svg/svg.hpp"
#include <string>
#include <vector>

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Classes
struct	LayoutParameters

Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::tree

Functions
void	write_color_tree_to_nexus_file (CommonTree const &tree, std::vector< double > const &value_per_branch, utils::ColorMap const &color_map, utils::ColorNormalization const &color_norm, std::string const &nexus_filename)
void	write_color_tree_to_nexus_file (CommonTree const &tree, std::vector< utils::Color > const &color_per_branch, std::string const &nexus_filename)
void	write_color_tree_to_phyloxml_file (CommonTree const &tree, std::vector< double > const &value_per_branch, utils::ColorMap const &color_map, utils::ColorNormalization const &color_norm, std::string const &phyloxml_filename)
void	write_color_tree_to_phyloxml_file (CommonTree const &tree, std::vector< utils::Color > const &color_per_branch, std::string const &phyloxml_filename)
void	write_color_tree_to_svg_file (CommonTree const &tree, LayoutParameters const &params, std::vector< double > const &value_per_branch, utils::ColorMap const &color_map, utils::ColorNormalization const &color_norm, std::string const &svg_filename)
void	write_color_tree_to_svg_file (CommonTree const &tree, LayoutParameters const &params, std::vector< utils::Color > const &color_per_branch, std::string const &svg_filename)
void	write_color_tree_to_svg_file (CommonTree const &tree, LayoutParameters const &params, std::vector< utils::Color > const &color_per_branch, std::vector< utils::Color > const &color_list, std::vector< std::string > const &color_labels, std::string const &svg_filename)
void	write_color_tree_to_svg_file (CommonTree const &tree, LayoutParameters const &params, std::vector< utils::Color > const &color_per_branch, utils::ColorMap const &color_map, utils::ColorNormalization const &color_norm, std::string const &svg_filename)
void	write_tree_to_newick_file (CommonTree const &tree, std::string const &newick_filename)
	Write a newick file containing a tree. More...
void	write_tree_to_nexus_file (CommonTree const &tree, std::string const &nexus_filename)
	Write a nexus file containing a tree. More...
void	write_tree_to_phyloxml_file (CommonTree const &tree, std::string const &phyloxml_filename)
	Write a phyloxml file containing a tree. More...
void	write_tree_to_svg_file (CommonTree const &tree, LayoutParameters const &params, std::string const &svg_filename)