#include "genesis/tree/mass_tree/phylo_factor.hpp"
#include "genesis/utils/color/color.hpp"
#include "genesis/utils/color/list_qualitative.hpp"
#include <functional>
#include <limits>
#include <unordered_set>
#include <vector>
Go to the source code of this file.
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| genesis |
| Container namespace for all symbols of genesis in order to keep them separate when used as a library.
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| genesis::tree |
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std::vector< utils::Color > | phylo_factor_clade_colors (Tree const &tree, std::vector< PhyloFactor > const &factors, size_t num_factors=0, PhyloFactorCladeColors colors={}) |
| Return a color for each edge, indicating which factor (phylogenetic unit, clade) it belongs to. More...
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std::vector< size_t > | phylo_factor_edge_indices (std::vector< PhyloFactor > const &factors, size_t max_factor=std::numeric_limits< std::size_t >::max()) |
| Get a list of all edges that have factored out by phylogenetic_factorization(). More...
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std::vector< utils::Color > | phylo_factor_single_factor_colors (Tree const &tree, std::vector< PhyloFactor > const &factors, size_t factor_index, PhyloFactorSingleColors colors={}) |
| Return a color for each edge indicating its role in a single phylogenetic factor. More...
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