tree/tree.hpp File Reference

Detailed Description

Header of Tree class.

For more information, see Tree class.

This header also includes all the essential other tree elements, as there is rarely a case where they are not needed anyway.

Definition in file tree/tree.hpp.

#include "genesis/tree/tree/node.hpp"
#include "genesis/tree/tree/edge.hpp"
#include "genesis/tree/tree/link.hpp"
#include "genesis/tree/tree/node_data.hpp"
#include "genesis/tree/tree/edge_data.hpp"
#include "genesis/utils/containers/range.hpp"
#include "genesis/utils/containers/deref_iterator.hpp"
#include <cassert>
#include <memory>
#include <vector>

Go to the source code of this file.

Classes
class	Tree
	Class for representing phylogenetic trees. More...

Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::tree

Functions
bool	validate_topology (Tree const &tree)
	Validate that all internal pointers of the Tree elements (TreeLinks, TreeNodes, TreeEdges) to each other are correct and that some other invariants are met. More...