A library for working with phylogenetic and population genetic data.
v0.27.0
variant.hpp
Go to the documentation of this file.
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#ifndef GENESIS_POPULATION_VARIANT_H_
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#define GENESIS_POPULATION_VARIANT_H_
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/*
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Genesis - A toolkit for working with phylogenetic data.
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Copyright (C) 2014-2021 Lucas Czech
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This program is free software: you can redistribute it and/or modify
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it under the terms of the GNU General Public License as published by
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the Free Software Foundation, either version 3 of the License, or
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(at your option) any later version.
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This program is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.
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You should have received a copy of the GNU General Public License
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along with this program. If not, see <http://www.gnu.org/licenses/>.
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Contact:
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Lucas Czech <lczech@carnegiescience.edu>
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Department of Plant Biology, Carnegie Institution For Science
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260 Panama Street, Stanford, CA 94305, USA
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*/
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#include "
genesis/population/base_counts.hpp
"
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#include <string>
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#include <vector>
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namespace
genesis
{
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namespace
population {
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// =================================================================================================
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// Variant
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// =================================================================================================
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struct
Variant
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{
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std::string
chromosome
;
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size_t
position
= 0;
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char
reference_base
=
'N'
;
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char
alternative_base
=
'N'
;
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std::vector<BaseCounts>
samples
;
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};
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}
// namespace population
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}
// namespace genesis
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#endif // include guard
base_counts.hpp
genesis::population::Variant::position
size_t position
Definition:
variant.hpp:65
genesis::population::Variant::reference_base
char reference_base
Definition:
variant.hpp:66
genesis::population::Variant::samples
std::vector< BaseCounts > samples
Definition:
variant.hpp:69
genesis::population::Variant
A single variant at a position in a chromosome, along with BaseCounts for a set of samples.
Definition:
variant.hpp:62
genesis
Container namespace for all symbols of genesis in order to keep them separate when used as a library.
Definition:
placement/formats/edge_color.cpp:42
genesis::population::Variant::alternative_base
char alternative_base
Definition:
variant.hpp:67
genesis::population::Variant::chromosome
std::string chromosome
Definition:
variant.hpp:64
lib
genesis
population
variant.hpp
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