placement/function/operators.cpp File Reference

#include "genesis/placement/function/operators.hpp"
#include "genesis/placement/function/functions.hpp"
#include "genesis/placement/function/helper.hpp"
#include "genesis/placement/function/masses.hpp"
#include "genesis/placement/placement_tree.hpp"
#include "genesis/placement/sample.hpp"
#include "genesis/tree/common_tree/functions.hpp"
#include "genesis/tree/common_tree/tree.hpp"
#include "genesis/tree/function/operators.hpp"
#include "genesis/tree/function/tree_set.hpp"
#include "genesis/tree/mass_tree/functions.hpp"
#include "genesis/tree/mass_tree/tree.hpp"
#include "genesis/tree/printer/compact.hpp"
#include "genesis/tree/tree_set.hpp"
#include "genesis/tree/tree.hpp"
#include "genesis/utils/text/table.hpp"
#include <cmath>
#include <ostream>
#include <sstream>
#include <unordered_map>

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Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::placement

Functions
double	add_sample_to_mass_tree (Sample const &smp, double const sign, double const scaler, tree::MassTree &target)
	Helper function to copy masses from a Sample to a MassTree. More...
bool	compatible_trees (PlacementTree const &lhs, PlacementTree const &rhs)
	Return whether two PlacementTrees are compatible. More...
bool	compatible_trees (Sample const &lhs, Sample const &rhs)
	Return whether the PlacementTrees of two Samples are compatible. More...
PlacementTree	convert_common_tree_to_placement_tree (tree::CommonTree const &source_tree)
	Convert a CommonTree into a PlacementTree. More...
std::pair< tree::TreeSet, std::vector< double > >	convert_sample_set_to_mass_trees (SampleSet const &sample_set, bool normalize)
	Convert all Samples in a SampleSet to tree::MassTrees. More...
std::pair< tree::MassTree, double >	convert_sample_to_mass_tree (Sample const &sample, bool normalize)
	Convert a Sample to a tree::MassTree. More...
std::ostream &	operator<< (std::ostream &out, Sample const &smp)
	Print a table of all Pqueries with their Placements and Names to the stream. More...
std::string	print_tree (Sample const &smp)
	Return a simple view of the Tree of a Sample with information about the Pqueries on it. More...