nhd.hpp File Reference

#include <cstddef>
#include <vector>

Go to the source code of this file.

Classes
struct	NodeDistanceHistogram
	Simple histogram data structure with equal sized bins. More...
struct	NodeDistanceHistogramSet
	Collection of NodeDistanceHistograms that describes one Sample. More...
class	Matrix< T >

Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::placement
	genesis::tree
	genesis::utils

Functions
NodeDistanceHistogramSet	node_distance_histogram_set (Sample const &sample, utils::Matrix< double > const &node_distances, utils::Matrix< signed char > const &node_sides, size_t const histogram_bins)
	Calculate the NodeDistanceHistogramSet representing a single Sample, given the necessary matrices of this Sample. More...
double	node_histogram_distance (NodeDistanceHistogramSet const &lhs, NodeDistanceHistogramSet const &rhs)
	Given the histogram sets that describe two Samples, calculate their distance. More...
double	node_histogram_distance (Sample const &sample_a, Sample const &sample_b, size_t const histogram_bins=25)
	Calculate the Node Histogram Distance of two Samples. More...
utils::Matrix< double >	node_histogram_distance (SampleSet const &sample_set, size_t const histogram_bins=25)
	Calculate the Node Histogram Distance of every pair of Samples in the SampleSet. More...
utils::Matrix< double >	node_histogram_distance (std::vector< NodeDistanceHistogramSet > const &histogram_sets)
	Given the histogram sets that describe a set of Samples, calculate their pairwise distance matrix. More...