logging.cpp

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/*
    Genesis - A toolkit for working with phylogenetic data.
    Copyright (C) 2014-2021 Lucas Czech
 
    This program is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.
 
    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.
 
    You should have received a copy of the GNU General Public License
    along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
    Contact:
    Lucas Czech <lczech@carnegiescience.edu>
    Department of Plant Biology, Carnegie Institution For Science
    260 Panama Street, Stanford, CA 94305, USA
*/
 
#include "genesis/utils/core/logging.hpp"
 
#include <fstream>
#include <iomanip>
#include <iostream>
#include <stdexcept>
#include <string>
 
#if defined(GENESIS_PTHREADS) || defined(GENESIS_OPENMP)
#    include <mutex>
#endif
 
#include "genesis/utils/core/std.hpp"
#include "genesis/utils/io/output_stream.hpp"
#include "genesis/utils/text/string.hpp"
#include "genesis/utils/tools/date_time.hpp"
 
namespace genesis {
namespace utils {
 
// =============================================================================
//     Settings
// =============================================================================
 
#if defined(GENESIS_PTHREADS) || defined(GENESIS_OPENMP)
    static std::mutex log_mutex;
#endif
 
// TODO use different init for log details depending on DEBUG
 
// init static members
LoggingDetails Logging::details = {
    false, // count
    false, // date
    false, // time
    false, // runtime
    false, // rundiff
    false, // file
    false, // line
    false, // function
    true   // level
};
Logging::LoggingLevel                       Logging::max_level_  = kDebug4;
long                                        Logging::count_      = 0;
clock_t                                     Logging::last_clock_ = 0;
std::vector<std::ostream*>                  Logging::ostreams_;
std::vector<std::unique_ptr<std::ofstream>> Logging::fstreams_;
int                                         Logging::report_percentage_ = 5;
std::string                                 Logging::debug_indent       = "    ";
 
void Logging::max_level (const LoggingLevel level)
{
    if (level > LOG_LEVEL_MAX) {
        throw std::runtime_error(
            "Logging max level set to " + std::to_string( level ) + ", but compile time max level is " +
            std::to_string( LOG_LEVEL_MAX ) + ", so that everything above that will not be logged."
        );
    }
    max_level_ = level;
}
 
void Logging::report_percentage (const int percentage)
{
    if (percentage <= 0) {
        throw std::runtime_error( "Logging report percentage less than 1% not possible." );
    }
    if (percentage > 100) {
        throw std::runtime_error( "Logging report percentage greater than 100% not meaningful." );
    }
    report_percentage_ = percentage;
}
 
std::string Logging::level_to_string(const LoggingLevel level)
{
    static const char* const buffer[] = {
        "NONE", "ERR ", "WARN", "INFO", "PROG",
        "MSG ", "MSG1", "MSG2", "MSG3", "MSG4",
        "DBG ", "DBG1", "DBG2", "DBG3", "DBG4"
    };
    return buffer[level];
}
 
void Logging::log_to_stdout ()
{
    // check whether stdout was already added.
    for (std::ostream* os : ostreams_) {
        if (os == &std::cout) {
            return;
        }
    }
 
    // if not, add it as output stream.
    ostreams_.push_back( &std::cout );
}
 
void Logging::log_to_stream (std::ostream& os)
{
    ostreams_.push_back( &os );
}
 
void Logging::log_to_file( std::string const& filename )
{
    // std::ofstream* file_stream = new std::ofstream();
    // utils::file_output_stream( filename, *file_stream );
    // fstreams_.push_back( file_stream );
 
    // Although we are in untils namespace here, we specify the namespace full,
    // in order to avoid ambiguous overload when compiled with C++17.
    fstreams_.push_back( genesis::utils::make_unique<std::ofstream>());
    utils::file_output_stream( filename, *fstreams_.back() );
}
 
void Logging::clear()
{
    ostreams_.clear();
    fstreams_.clear();
}
 
// =============================================================================
//     Destructor (does the actual work)
// =============================================================================
 
Logging::~Logging()
{
    // build the details for the log message into a buffer
    clock_t now_clock = clock();
    std::ostringstream det_buff;
    det_buff.str("");
    if (details_.count) {
        det_buff.fill('0');
        det_buff.width(4);
        det_buff << count_ << " ";
    }
    if (details_.date) {
        det_buff << current_date() << " ";
    }
    if (details_.time) {
        det_buff << current_time() << " ";
    }
    if (details_.runtime) {
        det_buff << std::fixed
                 << std::setprecision(6)
                 << double(now_clock) / CLOCKS_PER_SEC
                 << " ";
    }
    if (details_.rundiff) {
        double val = 0.0;
        if (last_clock_ > 0) {
            val = (double) (now_clock - last_clock_) / CLOCKS_PER_SEC;
        }
        det_buff << std::fixed
                 << std::setprecision(6)
                 << val
                 << " ";
        last_clock_ = now_clock;
    }
    if (details_.file) {
        det_buff << file_ << (details_.line ? "" : " ");
    }
    if (details_.line) {
        det_buff << ":" << line_ << " ";
    }
    if (details_.function) {
        det_buff << "(" << function_ << ") ";
    }
    if (details_.level) {
        det_buff << level_to_string(level_) << " ";
    }
 
    // add spaces for nested debug levels
    if (level_ > kDebug) {
        for (int i = 0; i < level_ - kDebug; i++) {
            det_buff << debug_indent;
        }
    }
 
    // make multi line log messages align to the length of the detail header,
    // and trim trailing whitespace, as we only want one newline at the end
    std::string msg = det_buff.str();
    if (msg.length() > 0) {
        msg += utils::replace_all(
            buff_.str(), "\n", "\n" + std::string(msg.length(), ' ')
        );
    } else {
        msg += buff_.str();
    }
    msg = utils::trim_right(msg);
 
    // output the message to every stream, thread safe!
#   if defined(GENESIS_PTHREADS) || defined(GENESIS_OPENMP)
    log_mutex.lock();
#   endif
 
    for( auto& out : ostreams_ ) {
        (*out) << msg << std::endl << std::flush;
    }
    for( auto& out : fstreams_ ) {
        (*out) << msg << std::endl << std::flush;
    }
 
#   if defined(GENESIS_PTHREADS) || defined(GENESIS_OPENMP)
    log_mutex.unlock();
#   endif
 
    // inc log message counter
    count_++;
}
 
// =============================================================================
//     Singleton accessors
// =============================================================================
 
std::ostringstream& Logging::get(
    const std::string& file, const int line, const std::string& function,
    const LoggingLevel level
)
{
    return get(file, line, function, level, details);
}
 
std::ostringstream& Logging::get(
    const std::string& file, const int line, const std::string& function,
    const LoggingLevel level, const LoggingDetails dets
)
{
    // save the information given when called from the macros
    file_     = file;
    line_     = line;
    function_ = function;
    level_    = level;
    details_  = dets;
    buff_.str("");
    return buff_;
}
 
} // namespace utils
} // namespace genesis