cathedral_plot.cpp File Reference

#include "genesis/population/plotting/cathedral_plot.hpp"
#include "genesis/population/plotting/genome_heatmap.hpp"
#include "genesis/utils/color/heat_map.hpp"
#include "genesis/utils/color/normalization.hpp"
#include "genesis/utils/containers/matrix/reader.hpp"
#include "genesis/utils/containers/matrix/writer.hpp"
#include "genesis/utils/core/fs.hpp"
#include "genesis/utils/formats/bmp/writer.hpp"
#include "genesis/utils/formats/json/document.hpp"
#include "genesis/utils/formats/json/reader.hpp"
#include "genesis/utils/formats/json/writer.hpp"
#include "genesis/utils/formats/svg/svg.hpp"
#include "genesis/utils/math/statistics.hpp"
#include "genesis/utils/text/string.hpp"
#include <cassert>
#include <cmath>
#include <memory>
#include <stdexcept>

Go to the source code of this file.

Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::population

Functions
genesis::utils::JsonDocument	cathedral_plot_parameters_to_json_document (CathedralPlotParameters const &parameters)
	Get a user-readable description of a CathedralPlotParameters as a JsonDocument. More...
genesis::utils::JsonDocument	cathedral_plot_record_to_json_document (CathedralPlotRecord const &record)
	Get a user-readable description of the data of a CathedralPlotRecord as a JsonDocument. More...
double	cathedral_window_width (CathedralPlotRecord const &record, size_t row)
	Compute the window width for a row in a cathedral plot. More...
CathedralWindowWidthMethod	cathedral_window_width_method_from_string (std::string const &method)
	Helper function to return a CathedralWindowWidthMethod from its textual representation. More...
std::string	cathedral_window_width_method_to_string (CathedralWindowWidthMethod method)
	Helper function to return a textual representation of the method. More...
std::pair< genesis::utils::JsonDocument, genesis::utils::Matrix< double > >	load_cathedral_plot_record_components_from_files (std::string const &base_path)
	Load the parts of a cathedral plot from a set of files. More...
CathedralPlotRecord	load_cathedral_plot_record_from_files (std::string const &base_path)
	Load the record of a cathedral plot from a set of files. More...
genesis::utils::Matrix< genesis::utils::Color >	make_cathedral_plot_heatmap (CathedralPlotRecord const &record, genesis::utils::HeatmapParameters const &heatmap_parameters)
	Make a cathedral plot heat map as a color matrix. More...
genesis::utils::SvgDocument	make_cathedral_plot_svg (CathedralPlotRecord const &record, genesis::utils::HeatmapParameters const &heatmap_parameters)
	Make a cathedral plot heat map and add it into an SVG document with legend and axes. More...
genesis::utils::SvgDocument	make_cathedral_plot_svg (CathedralPlotRecord const &record, genesis::utils::HeatmapParameters const &heatmap_parameters, genesis::utils::Matrix< genesis::utils::Color > const &image)
	Make a cathedral plot heat map and add it into an SVG document with legend and axes. More...
void	save_cathedral_plot_record_to_files (CathedralPlotRecord const &record, std::string const &base_path)
	Convenience function to save the record of a cathedral plot in a set of files. More...
void	save_cathedral_plot_record_to_files (genesis::utils::JsonDocument const &record_document, genesis::utils::Matrix< double > const &record_value_matrix, std::string const &base_path)
	Save the record of a cathedral plot in a set of files. More...
void	save_cathedral_plot_record_to_targets (genesis::utils::JsonDocument const &record_document, genesis::utils::Matrix< double > const &record_value_matrix, std::shared_ptr< genesis::utils::BaseOutputTarget > json_target, std::shared_ptr< genesis::utils::BaseOutputTarget > csv_target)
	Save the record of a cathedral plot in a set of output targets. More...
void	validate_cathedral_plot_record (CathedralPlotRecord const &record)
	Check a Cathedral Plot record for internal consistency. More...