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sample_set.cpp File Reference

`#include "genesis/placement/function/sample_set.hpp"`

`#include "genesis/placement/function/functions.hpp"`

`#include "genesis/placement/function/operators.hpp"`

`#include "genesis/tree/default/functions.hpp"`

`#include "genesis/tree/function/tree_set.hpp"`

`#include "genesis/tree/tree_set.hpp"`

`#include <ostream>`

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## Namespaces | |

genesis | |

Container namespace for all symbols of genesis in order to keep them separate when used as a library. | |

genesis::placement | |

## Functions | |

void | adjust_branch_lengths (SampleSet &sample_set, tree::Tree const &source) |

Take the branch lengths of the `source` Tree and use them as the new branch lengths of the Samples in the `sample_set` . More... | |

void | adjust_to_average_branch_lengths (SampleSet &sample_set) |

Set the branch lengths of all Samples in the `sample_set` to the respecitve average branch length of the Samples. More... | |

bool | all_identical_trees (SampleSet const &sample_set) |

Returns true iff all Trees of the Samples in the set are identical. More... | |

tree::Tree | average_branch_length_tree (SampleSet const &sample_set) |

Return the Tree that has edges with the average branch length of the respective edges of the Trees in the Samples of the given SampleSet. More... | |

Sample * | find_sample (SampleSet &sample_set, std::string const &name) |

Get the first Sample in a SampleSet that has a given name, or `nullptr` if not found. More... | |

Sample const * | find_sample (SampleSet const &sample_set, std::string const &name) |

Get the first Sample in a SampleSet that has a given name, or `nullptr` if not found. More... | |

Sample | merge_all (SampleSet const &sample_set) |

Returns a Sample where all Samples of a SampleSet have been merged into. More... | |

std::ostream & | operator<< (std::ostream &out, SampleSet const &sample_set) |

size_t | total_pquery_count (SampleSet const &sample_set) |

Return the total number of Pqueries in the Samples of the SampleSet. More... | |

tree::TreeSet | tree_set (SampleSet const &sample_set) |

Return a TreeSet containing all the trees of the SampleSet. More... | |