sam_variant_input_iterator.hpp File Reference

#include "genesis/population/base_counts.hpp"
#include "genesis/population/functions/genome_locus.hpp"
#include "genesis/population/genome_locus.hpp"
#include "genesis/population/variant.hpp"
#include "genesis/utils/core/fs.hpp"
#include <cstdint>
#include <memory>
#include <string>
#include <unordered_map>
#include <unordered_set>
#include <vector>

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Classes
class	SamVariantInputIterator
	Input iterator for SAM/BAM/CRAM files that produces a Variant per genome position. More...
class	SamVariantInputIterator::Iterator
	Iterator over loci of the input sources. More...

Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::population

Typedefs
typedef struct bam_plp_s *	bam_plp_t

Typedef Documentation

bam_plp_t

typedef struct bam_plp_s* bam_plp_t

Definition at line 60 of file sam_variant_input_iterator.hpp.