A library for working with phylogenetic and population genetic data.
v0.32.0
placement/function/manipulation.hpp
Go to the documentation of this file.
1
#ifndef GENESIS_PLACEMENT_FUNCTION_MANIPULATION_H_
2
#define GENESIS_PLACEMENT_FUNCTION_MANIPULATION_H_
3
4
/*
5
Genesis - A toolkit for working with phylogenetic data.
6
Copyright (C) 2014-2018 Lucas Czech, Pierre Barbera and HITS gGmbH
7
8
This program is free software: you can redistribute it and/or modify
9
it under the terms of the GNU General Public License as published by
10
the Free Software Foundation, either version 3 of the License, or
11
(at your option) any later version.
12
13
This program is distributed in the hope that it will be useful,
14
but WITHOUT ANY WARRANTY; without even the implied warranty of
15
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
16
GNU General Public License for more details.
17
18
You should have received a copy of the GNU General Public License
19
along with this program. If not, see <http://www.gnu.org/licenses/>.
20
21
Contact:
22
Lucas Czech <lucas.czech@h-its.org>
23
Exelixis Lab, Heidelberg Institute for Theoretical Studies
24
Schloss-Wolfsbrunnenweg 35, D-69118 Heidelberg, Germany
25
*/
26
34
#include "
genesis/placement/sample.hpp
"
35
36
namespace
genesis
{
37
namespace
placement {
38
39
// =================================================================================================
40
// Forward Declarations
41
// =================================================================================================
42
43
class
Sample;
44
45
// =================================================================================================
46
// Rooting
47
// =================================================================================================
48
64
void
make_rooted
( Sample& sample,
PlacementTreeEdge
& target_edge );
65
66
}
// namespace tree
67
}
// namespace placement
68
69
#endif // include guard
genesis::placement::make_rooted
void make_rooted(Sample &sample, PlacementTreeEdge &target_edge)
Root the underlying PlacementTree of a Sample at a specified TreeEdge.
Definition:
placement/function/manipulation.cpp:51
genesis
Container namespace for all symbols of genesis in order to keep them separate when used as a library.
Definition:
placement/formats/edge_color.cpp:42
genesis::placement::PlacementTreeEdge
tree::TreeEdge PlacementTreeEdge
Alias for tree::TreeEdge used in a PlacementTree. See PlacementEdgeData for the data stored on the ed...
Definition:
jplace_reader.hpp:57
sample.hpp
lib
genesis
placement
function
manipulation.hpp
Generated on Mon Aug 5 2024 16:57:52 for genesis by
1.8.17