placement/function/emd.cpp File Reference

#include "genesis/placement/function/emd.hpp"
#include "genesis/placement/function/functions.hpp"
#include "genesis/placement/function/helper.hpp"
#include "genesis/placement/function/masses.hpp"
#include "genesis/placement/function/operators.hpp"
#include "genesis/placement/sample_set.hpp"
#include "genesis/placement/sample.hpp"
#include "genesis/tree/common_tree/functions.hpp"
#include "genesis/tree/function/tree_set.hpp"
#include "genesis/tree/mass_tree/emd.hpp"
#include "genesis/tree/mass_tree/functions.hpp"
#include "genesis/tree/mass_tree/tree.hpp"
#include "genesis/tree/tree_set.hpp"
#include "genesis/tree/tree.hpp"
#include "genesis/utils/containers/matrix.hpp"
#include <cassert>

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Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::placement

Functions
double	earth_movers_distance (Sample const &lhs, Sample const &rhs, double const p=1.0, bool const with_pendant_length=false)
	Calculate the earth mover's distance between two Samples. More...
utils::Matrix< double >	earth_movers_distance (SampleSet const &sample_set, double const p=1.0, bool const with_pendant_length=false)
	Calculate the pairwise Earth Movers Distance for all Samples in a SampleSet. More...