A library for working with phylogenetic and population genetic data.
v0.32.0
placement/formats/edge_color.hpp
Go to the documentation of this file.
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#ifndef GENESIS_PLACEMENT_FORMATS_EDGE_COLOR_H_
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#define GENESIS_PLACEMENT_FORMATS_EDGE_COLOR_H_
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/*
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Genesis - A toolkit for working with phylogenetic data.
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Copyright (C) 2014-2017 Lucas Czech
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This program is free software: you can redistribute it and/or modify
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it under the terms of the GNU General Public License as published by
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the Free Software Foundation, either version 3 of the License, or
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(at your option) any later version.
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This program is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.
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You should have received a copy of the GNU General Public License
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along with this program. If not, see <http://www.gnu.org/licenses/>.
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Contact:
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Lucas Czech <lucas.czech@h-its.org>
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Exelixis Lab, Heidelberg Institute for Theoretical Studies
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Schloss-Wolfsbrunnenweg 35, D-69118 Heidelberg, Germany
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*/
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#include <vector>
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namespace
genesis
{
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// =================================================================================================
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// Forward Declarations
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// =================================================================================================
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namespace
utils {
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class
Color
;
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}
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namespace
tree {
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class
Tree
;
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}
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namespace
placement {
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class
PlacementNodeData;
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class
PlacementEdgeData;
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using
PlacementTree
=
tree::Tree
;
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class
Sample
;
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}
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// =================================================================================================
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// Placement Edge Color Functions
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// =================================================================================================
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namespace
placement {
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std::vector<utils::Color>
placement_color_count_gradient
( Sample
const
& smp,
bool
linear =
false
);
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}
// namespace placement
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}
// namespace genesis
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#endif // include guard
genesis::utils::Color
Definition:
color.hpp:47
genesis::placement::Sample
Manage a set of Pqueries along with the PlacementTree where the PqueryPlacements are placed on.
Definition:
sample.hpp:68
genesis::tree::Tree
Class for representing phylogenetic trees.
Definition:
tree/tree.hpp:97
genesis
Container namespace for all symbols of genesis in order to keep them separate when used as a library.
Definition:
placement/formats/edge_color.cpp:42
genesis::placement::placement_color_count_gradient
std::vector< utils::Color > placement_color_count_gradient(Sample const &smp, bool linear)
Returns a vector with a Color for each edge that visualizes the number of placements on that edge.
Definition:
placement/formats/edge_color.cpp:71
lib
genesis
placement
formats
edge_color.hpp
Generated on Mon Aug 5 2024 16:57:51 for genesis by
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