A toolkit for working with phylogenetic data.
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placement/formats/edge_color.hpp
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1 #ifndef GENESIS_PLACEMENT_FORMATS_EDGE_COLOR_H_
2 #define GENESIS_PLACEMENT_FORMATS_EDGE_COLOR_H_
3 
4 /*
5  Genesis - A toolkit for working with phylogenetic data.
6  Copyright (C) 2014-2017 Lucas Czech
7 
8  This program is free software: you can redistribute it and/or modify
9  it under the terms of the GNU General Public License as published by
10  the Free Software Foundation, either version 3 of the License, or
11  (at your option) any later version.
12 
13  This program is distributed in the hope that it will be useful,
14  but WITHOUT ANY WARRANTY; without even the implied warranty of
15  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
16  GNU General Public License for more details.
17 
18  You should have received a copy of the GNU General Public License
19  along with this program. If not, see <http://www.gnu.org/licenses/>.
20 
21  Contact:
22  Lucas Czech <lucas.czech@h-its.org>
23  Exelixis Lab, Heidelberg Institute for Theoretical Studies
24  Schloss-Wolfsbrunnenweg 35, D-69118 Heidelberg, Germany
25 */
26 
34 #include <vector>
35 
36 namespace genesis {
37 
38 // =================================================================================================
39 // Forward Declarations
40 // =================================================================================================
41 
42 namespace utils {
43  class Color;
44 }
45 
46 namespace tree {
47  class Tree;
48 }
49 
50 namespace placement {
51  class PlacementNodeData;
52  class PlacementEdgeData;
53 
55 
56  class Sample;
57 }
58 
59 // =================================================================================================
60 // Placement Edge Color Functions
61 // =================================================================================================
62 
63 namespace placement {
64 
65 std::vector<utils::Color> placement_color_count_gradient( Sample const& smp, bool linear = false );
66 
67 } // namespace placement
68 } // namespace genesis
69 
70 #endif // include guard
std::vector< utils::Color > placement_color_count_gradient(Sample const &smp, bool linear)
Returns a vector with a Color for each edge that visualizes the number of placements on that edge...
Class for representing phylogenetic trees.
Definition: tree/tree.hpp:95
Manage a set of Pqueries along with the PlacementTree where the PqueryPlacements are placed on...
Definition: sample.hpp:68