phylo_factor_colors.cpp File Reference

#include "genesis/tree/mass_tree/phylo_factor_colors.hpp"
#include <cassert>
#include <stdexcept>

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Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::tree

Functions
std::vector< utils::Color >	phylo_factor_clade_colors (Tree const &tree, std::vector< PhyloFactor > const &factors, size_t num_factors=0, PhyloFactorCladeColors colors={})
	Return a color for each edge, indicating which factor (phylogenetic unit, clade) it belongs to. More...
std::vector< size_t >	phylo_factor_edge_indices (std::vector< PhyloFactor > const &factors, size_t max_factor=std::numeric_limits< std::size_t >::max())
	Get a list of all edges that have factored out by phylogenetic_factorization(). More...
std::vector< utils::Color >	phylo_factor_single_factor_colors (Tree const &tree, std::vector< PhyloFactor > const &factors, size_t factor_index, PhyloFactorSingleColors colors={})
	Return a color for each edge indicating its role in a single phylogenetic factor. More...