heat_tree.hpp

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#ifndef GENESIS_TREE_DRAWING_HEAT_TREE_H_
#define GENESIS_TREE_DRAWING_HEAT_TREE_H_
 
/*
    Genesis - A toolkit for working with phylogenetic data.
    Copyright (C) 2014-2023 Lucas Czech
 
    This program is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.
 
    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.
 
    You should have received a copy of the GNU General Public License
    along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
    Contact:
    Lucas Czech <lczech@carnegiescience.edu>
    Department of Plant Biology, Carnegie Institution For Science
    260 Panama Street, Stanford, CA 94305, USA
*/
 
#include "genesis/tree/common_tree/tree.hpp"
#include "genesis/tree/drawing/layout_base.hpp"
#include "genesis/utils/containers/matrix.hpp"
#include "genesis/utils/formats/svg/svg.hpp"
#include "genesis/utils/color/color.hpp"
#include "genesis/utils/color/map.hpp"
#include "genesis/utils/color/normalization.hpp"
 
#include <string>
#include <vector>
 
namespace genesis {
namespace tree {
 
// =================================================================================================
//     SVG Functions
// =================================================================================================
 
struct HeatTreeParameters
{
    // Tree parameters
    CommonTree                  tree;
    LayoutType                  type      = LayoutType::kCladogram;
    bool                        ladderize = true;
    std::vector<utils::Color>   color_per_branch;
    utils::SvgStroke            stroke;
 
    // Matrix parameters
    utils::Matrix<utils::Color> matrix;
    std::vector<std::string>    column_labels;
    bool                        matrix_as_bmp = false;
};
 
utils::SvgDocument heat_tree(
    HeatTreeParameters const&        params
);
 
utils::SvgDocument heat_tree(
    HeatTreeParameters const&        params,
    utils::ColorMap const&           matrix_color_map,
    utils::ColorNormalization const& matrix_color_norm
);
 
utils::SvgDocument heat_tree(
    HeatTreeParameters const&        params,
    utils::ColorMap const&           matrix_color_map,
    utils::ColorNormalization const& matrix_color_norm,
    utils::ColorMap const&           tree_color_map,
    utils::ColorNormalization const& tree_color_norm
);
 
} // namespace tree
} // namespace genesis
 
#endif // include guard