LayoutBase Class Reference

#include <genesis/tree/drawing/layout_base.hpp>

Inherited by CircularLayout, and RectangularLayout.

Detailed Description

Definition at line 91 of file layout_base.hpp.

Public Member Functions
	LayoutBase ()=default
	LayoutBase (LayoutBase &&)=default
	LayoutBase (LayoutBase const &)=default
	LayoutBase (Tree const &orig_tree, LayoutType const drawing_type=LayoutType::kCladogram, bool ladderize=true)
virtual	~LayoutBase ()=default
bool	align_labels () const
void	align_labels (bool value)
	Align the taxon labels/node names/texts to each other. More...
double	extra_spacer () const
void	extra_spacer (double value)
	Set some extra space betwen the tree nodes and their labels when align_labels() is set to true. More...
LayoutSpreading	inner_node_spreading () const
void	inner_node_spreading (LayoutSpreading value)
LayoutBase &	operator= (LayoutBase &&)=default
LayoutBase &	operator= (LayoutBase const &)=default
void	set_edge_distance_strokes (std::vector< utils::SvgStroke > const &strokes)
void	set_edge_distance_strokes (utils::SvgStroke const &stroke)
void	set_edge_shapes (std::vector< utils::SvgGroup > const &shapes)
void	set_edge_shapes (utils::SvgGroup const &shape)
void	set_edge_spreading_strokes (std::vector< utils::SvgStroke > const &strokes)
void	set_edge_spreading_strokes (utils::SvgStroke const &stroke)
void	set_edge_strokes (std::vector< utils::SvgStroke > const &strokes)
void	set_edge_strokes (utils::SvgStroke const &stroke)
void	set_label_spacer_strokes (std::vector< utils::SvgStroke > const &strokes)
void	set_label_spacer_strokes (utils::SvgStroke const &stroke, LayoutSpreading spreading=LayoutSpreading::kLeafNodesOnly)
void	set_node_shapes (std::vector< utils::SvgGroup > const &shapes)
void	set_node_shapes (utils::SvgGroup const &shape)
utils::SvgText &	text_template ()
utils::SvgText const &	text_template () const
void	text_template (utils::SvgText const &tt)
utils::SvgDocument	to_svg_document () const
Tree const &	tree () const
void	tree (Tree const &orig_tree, bool ladderize=true)
LayoutType	type () const
void	type (LayoutType const drawing_type)

Protected Member Functions
virtual utils::SvgDocument	to_svg_document_ () const =0
Tree &	tree ()

Constructor & Destructor Documentation

LayoutBase() [1/4]

LayoutBase ( )

default

LayoutBase() [2/4]

LayoutBase ( Tree const &  orig_tree, LayoutType const  drawing_type = LayoutType::kCladogram, bool  ladderize = true  )

inline

Definition at line 101 of file layout_base.hpp.

~LayoutBase()

virtual ~LayoutBase ( )

virtualdefault

LayoutBase() [3/4]

LayoutBase ( LayoutBase const &  )

default

LayoutBase() [4/4]

LayoutBase ( LayoutBase &&  )

default

Member Function Documentation

align_labels() [1/2]

bool align_labels

(

)

const

Definition at line 523 of file layout_base.cpp.

align_labels() [2/2]

void align_labels

(

bool

value

)

Align the taxon labels/node names/texts to each other.

If set to true, the taxon names are aligned with each other. This is particularly interesting in phylograms, where they otherwise are placed close to their nodes. In cladograms, the tip nodes are aligned to each other anyway, so there is not much of a difference there.

In order to still be able to see which label belongs to which node, a label spacer line is drawn for each node, using LayoutNodeData::spacer_stroke. These strokes can be set with set_label_spacer_strokes().

Note also the extra_spacer() setting, which modifies how much longer the spacer line is than the exact alignment. This setting is useful to create some extra space between the tree and the aligned labels.

Definition at line 518 of file layout_base.cpp.

extra_spacer() [1/2]

double extra_spacer

(

)

const

Definition at line 533 of file layout_base.cpp.

extra_spacer() [2/2]

void extra_spacer

(

double

value

)

Set some extra space betwen the tree nodes and their labels when align_labels() is set to true.

Definition at line 528 of file layout_base.cpp.

inner_node_spreading() [1/2]

LayoutSpreading inner_node_spreading

(

)

const

Definition at line 513 of file layout_base.cpp.

inner_node_spreading() [2/2]

void inner_node_spreading

(

LayoutSpreading

value

)

Definition at line 505 of file layout_base.cpp.

operator=() [1/2]

LayoutBase& operator= ( LayoutBase &&  )

default

operator=() [2/2]

LayoutBase& operator= ( LayoutBase const &  )

default

set_edge_distance_strokes() [1/2]

void set_edge_distance_strokes

(

std::vector< utils::SvgStroke > const &

strokes

)

Definition at line 122 of file layout_base.cpp.

set_edge_distance_strokes() [2/2]

void set_edge_distance_strokes

(

utils::SvgStroke const &

stroke

)

Definition at line 115 of file layout_base.cpp.

set_edge_shapes() [1/2]

void set_edge_shapes

(

std::vector< utils::SvgGroup > const &

shapes

)

Definition at line 210 of file layout_base.cpp.

set_edge_shapes() [2/2]

void set_edge_shapes

(

utils::SvgGroup const &

shape

)

Definition at line 203 of file layout_base.cpp.

set_edge_spreading_strokes() [1/2]

void set_edge_spreading_strokes

(

std::vector< utils::SvgStroke > const &

strokes

)

Definition at line 98 of file layout_base.cpp.

set_edge_spreading_strokes() [2/2]

void set_edge_spreading_strokes

(

utils::SvgStroke const &

stroke

)

Definition at line 91 of file layout_base.cpp.

set_edge_strokes() [1/2]

void set_edge_strokes

(

std::vector< utils::SvgStroke > const &

strokes

)

Definition at line 85 of file layout_base.cpp.

set_edge_strokes() [2/2]

void set_edge_strokes

(

utils::SvgStroke const &

stroke

)

Definition at line 79 of file layout_base.cpp.

set_label_spacer_strokes() [1/2]

void set_label_spacer_strokes

(

std::vector< utils::SvgStroke > const &

strokes

)

Definition at line 154 of file layout_base.cpp.

set_label_spacer_strokes() [2/2]

void set_label_spacer_strokes	(	utils::SvgStroke const &	stroke,
		LayoutSpreading	spreading = LayoutSpreading::kLeafNodesOnly
	)

Definition at line 139 of file layout_base.cpp.

set_node_shapes() [1/2]

void set_node_shapes

(

std::vector< utils::SvgGroup > const &

shapes

)

Definition at line 234 of file layout_base.cpp.

set_node_shapes() [2/2]

void set_node_shapes

(

utils::SvgGroup const &

shape

)

Definition at line 227 of file layout_base.cpp.

text_template() [1/3]

utils::SvgText const & text_template

(

)

Definition at line 543 of file layout_base.cpp.

text_template() [2/3]

utils::SvgText const& text_template

(

)

const

text_template() [3/3]

void text_template

(

utils::SvgText const &

tt

)

Definition at line 538 of file layout_base.cpp.

to_svg_document()

utils::SvgDocument to_svg_document ( ) const

inline

Definition at line 158 of file layout_base.hpp.

to_svg_document_()

virtual utils::SvgDocument to_svg_document_ ( ) const

protectedpure virtual

tree() [1/3]

Tree& tree ( )

protected

tree() [2/3]

Tree const & tree

(

)

const

Definition at line 65 of file layout_base.cpp.

tree() [3/3]

void tree	(	Tree const &	orig_tree,
		bool	ladderize = true
	)

Definition at line 53 of file layout_base.cpp.

type() [1/2]

LayoutType type

(

)

const

Definition at line 500 of file layout_base.cpp.

type() [2/2]

void type

(

LayoutType const

drawing_type

)

Definition at line 492 of file layout_base.cpp.

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The documentation for this class was generated from the following files:

• layout_base.hpp
• layout_base.cpp