Detailed Description

Definition at line 121 of file phyloxml_writer.hpp.

Public Member Functions
	CommonTreePhyloxmlWriter ()

Public Member Functions inherited from PhyloxmlWriter
	PhyloxmlWriter ()=default

	PhyloxmlWriter (PhyloxmlWriter &&)=default

	PhyloxmlWriter (PhyloxmlWriter const &)=default

virtual	~PhyloxmlWriter ()=default

PhyloxmlWriter &	operator= (PhyloxmlWriter &&)=default

PhyloxmlWriter &	operator= (PhyloxmlWriter const &)=default

void	to_document (Tree const &tree, utils::XmlDocument &xml) const
	Store the information of the tree into an Phyloxml-formatted XmlDocument. More...

void	write (Tree const &tree, std::shared_ptr< utils::BaseOutputTarget > target) const
	Write a Tree to an output target, using the Phyloxml format. More...

Public Member Functions inherited from CommonTreePhyloxmlWriterPlugin
	CommonTreePhyloxmlWriterPlugin ()=default

	CommonTreePhyloxmlWriterPlugin (CommonTreePhyloxmlWriterPlugin &&)=default

	CommonTreePhyloxmlWriterPlugin (CommonTreePhyloxmlWriterPlugin const &)=default

virtual	~CommonTreePhyloxmlWriterPlugin ()=default

void	edge_to_element (TreeEdge const &edge, utils::XmlElement &element) const

void	node_to_element (TreeNode const &node, utils::XmlElement &element) const

CommonTreePhyloxmlWriterPlugin &	operator= (CommonTreePhyloxmlWriterPlugin &&)=default

CommonTreePhyloxmlWriterPlugin &	operator= (CommonTreePhyloxmlWriterPlugin const &)=default

void	register_with (PhyloxmlWriter &writer) const

Additional Inherited Members
Public Types inherited from PhyloxmlWriter
using	edge_to_element_function = std::function< void(TreeEdge const &edge, utils::XmlElement &element) >
	Function type that translates from a TreeEdge to an XmlElement. More...

using	finish_writing_function = std::function< void(Tree const &tree, utils::XmlDocument &xml) >
	Function type that allows to do some finalizing work with the Tree and XmlDocument after the actual tree writing finished. More...

using	node_to_element_function = std::function< void(TreeNode const &node, utils::XmlElement &element) >
	Function type that translates from a TreeNode to an XmlElement. More...

using	prepare_writing_function = std::function< void(Tree const &tree, utils::XmlDocument &xml) >
	Function type that allows to do some preparatory work with the Tree and XmlDocument before the actual tree writing begins. More...

Public Attributes inherited from PhyloxmlWriter
std::vector< edge_to_element_function >	edge_to_element_plugins
	Collect all functions to be called for each TreeEdge in order to translate it to a Phyloxml representation. More...

std::vector< finish_writing_function >	finish_writing_plugins
	Collect all functions to be called after finishing the actual tree writing. More...

std::vector< node_to_element_function >	node_to_element_plugins
	Collect all functions to be called for each TreeNode in order to translate it to a Phyloxml representation. More...

std::vector< prepare_writing_function >	prepare_writing_plugins
	Collect all functions to be called before starting the actual tree writing. More...

Constructor & Destructor Documentation

◆ CommonTreePhyloxmlWriter()

CommonTreePhyloxmlWriter ( )

inline

Definition at line 131 of file phyloxml_writer.hpp.

The documentation for this class was generated from the following file:

phyloxml_writer.hpp

Detailed Description

Public Member Functions

Additional Inherited Members

Constructor & Destructor Documentation

◆ CommonTreePhyloxmlWriter()