vcf_format_iterator.hpp File Reference

#include "genesis/population/format/vcf_common.hpp"
#include "genesis/population/format/vcf_header.hpp"
#include <cassert>
#include <cstdint>
#include <memory>
#include <stdexcept>
#include <string>
#include <vector>

Go to the source code of this file.

Classes
class	VcfFormatHelper
	Provide htslib helper functions. More...
class	VcfFormatIterator< S, T >
	Iterate the FORMAT information for the samples in a SNP/variant line in a VCF/BCF file. More...
class	VcfFormatIterator< S, T >
	Iterate the FORMAT information for the samples in a SNP/variant line in a VCF/BCF file. More...

Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::population

Typedefs
using	VcfFormatIteratorFloat = VcfFormatIterator< float, double >
using	VcfFormatIteratorGenotype = VcfFormatIterator< int32_t, VcfGenotype >
using	VcfFormatIteratorInt = VcfFormatIterator< int32_t, int32_t >
using	VcfFormatIteratorString = VcfFormatIterator< char *, std::string >