variant_input_stream.cpp File Reference

#include "genesis/population/function/variant_input_stream.hpp"
#include "genesis/population/function/subsample.hpp"
#include <cassert>
#include <stdexcept>
#include <unordered_set>

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Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::population

Functions
std::vector< bool >	make_sample_name_filter (std::vector< std::string > const &sample_names, std::vector< std::string > const &names_filter, bool inverse_filter=false)
	Create a filter for samples, indicating which to keep. More...
std::function< void(Variant &)>	make_variant_input_stream_sample_name_filter_transform (std::vector< bool > const &sample_filter)
std::function< void(Variant &)>	make_variant_input_stream_sample_subsampling_transform (size_t max_depth, SubsamplingMethod method)
std::function< void(Variant const &)>	make_variant_input_stream_sequence_length_observer (std::shared_ptr< genesis::sequence::SequenceDict > sequence_dict)
std::function< void(Variant const &)>	make_variant_input_stream_sequence_order_observer (std::shared_ptr< genesis::sequence::SequenceDict > sequence_dict, bool check_sequence_lengths)