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A library for working with phylogenetic and population genetic data.
v0.32.0 |
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A library for working with phylogenetic and population genetic data.
v0.32.0 |
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#include "genesis/population/filter/filter_stats.hpp"#include "genesis/population/filter/filter_status.hpp"#include "genesis/population/filter/sample_counts_filter.hpp"#include "genesis/population/filter/sample_counts_filter_numerical.hpp"#include "genesis/population/filter/sample_counts_filter_positional.hpp"#include "genesis/population/filter/variant_filter.hpp"#include "genesis/population/filter/variant_filter_numerical.hpp"#include "genesis/population/filter/variant_filter_positional.hpp"#include "genesis/population/format/bed_reader.hpp"#include "genesis/population/format/frequency_table_input_stream.hpp"#include "genesis/population/format/genome_region_reader.hpp"#include "genesis/population/format/gff_reader.hpp"#include "genesis/population/format/hts_file.hpp"#include "genesis/population/format/map_bim_reader.hpp"#include "genesis/population/format/sam_flags.hpp"#include "genesis/population/format/sam_variant_input_stream.hpp"#include "genesis/population/format/simple_pileup_common.hpp"#include "genesis/population/format/simple_pileup_input_stream.hpp"#include "genesis/population/format/simple_pileup_reader.hpp"#include "genesis/population/format/sync_common.hpp"#include "genesis/population/format/sync_input_stream.hpp"#include "genesis/population/format/sync_reader.hpp"#include "genesis/population/format/vcf_common.hpp"#include "genesis/population/format/vcf_format_iterator.hpp"#include "genesis/population/format/vcf_header.hpp"#include "genesis/population/format/vcf_input_stream.hpp"#include "genesis/population/format/vcf_record.hpp"#include "genesis/population/function/diversity_pool_calculator.hpp"#include "genesis/population/function/diversity_pool_functions.hpp"#include "genesis/population/function/diversity_pool_processor.hpp"#include "genesis/population/function/fst_cathedral.hpp"#include "genesis/population/function/fst_pool_calculator.hpp"#include "genesis/population/function/fst_pool_functions.hpp"#include "genesis/population/function/fst_pool_karlsson.hpp"#include "genesis/population/function/fst_pool_kofler.hpp"#include "genesis/population/function/fst_pool_processor.hpp"#include "genesis/population/function/fst_pool_unbiased.hpp"#include "genesis/population/function/functions.hpp"#include "genesis/population/function/genome_locus.hpp"#include "genesis/population/function/genome_locus_set.hpp"#include "genesis/population/function/genome_region.hpp"#include "genesis/population/function/subsample.hpp"#include "genesis/population/function/variant_input_stream.hpp"#include "genesis/population/function/window_average.hpp"#include "genesis/population/genome_locus.hpp"#include "genesis/population/genome_locus_set.hpp"#include "genesis/population/genome_region.hpp"#include "genesis/population/genome_region_list.hpp"#include "genesis/population/plotting/af_spectrum.hpp"#include "genesis/population/plotting/cathedral_plot.hpp"#include "genesis/population/plotting/genome_heatmap.hpp"#include "genesis/population/plotting/heatmap_colorization.hpp"#include "genesis/population/sample_counts.hpp"#include "genesis/population/stream/variant_gapless_input_stream.hpp"#include "genesis/population/stream/variant_input_stream_adapters.hpp"#include "genesis/population/stream/variant_input_stream.hpp"#include "genesis/population/stream/variant_input_stream_sources.hpp"#include "genesis/population/stream/variant_parallel_input_stream.hpp"#include "genesis/population/variant.hpp"#include "genesis/population/window/base_window.hpp"#include "genesis/population/window/base_window_stream.hpp"#include "genesis/population/window/chromosome_window_stream.hpp"#include "genesis/population/window/functions.hpp"#include "genesis/population/window/genome_window_stream.hpp"#include "genesis/population/window/interval_window_stream.hpp"#include "genesis/population/window/position_window_stream.hpp"#include "genesis/population/window/queue_window_stream.hpp"#include "genesis/population/window/region_window_stream.hpp"#include "genesis/population/window/sliding_window_generator.hpp"#include "genesis/population/window/variant_window_stream.hpp"#include "genesis/population/window/vcf_window.hpp"#include "genesis/population/window/window.hpp"#include "genesis/population/window/window_view.hpp"#include "genesis/population/window/window_view_stream.hpp"
1.8.17