phylo_ilr.cpp File Reference

#include "genesis/tree/mass_tree/phylo_ilr.hpp"
#include "genesis/tree/function/functions.hpp"
#include "genesis/tree/function/operators.hpp"
#include "genesis/tree/iterator/preorder.hpp"
#include "genesis/tree/mass_tree/balances.hpp"
#include "genesis/tree/mass_tree/functions.hpp"
#include "genesis/tree/mass_tree/tree.hpp"
#include "genesis/tree/tree.hpp"
#include "genesis/tree/tree/subtree.hpp"
#include "genesis/utils/math/common.hpp"
#include "genesis/utils/math/statistics.hpp"
#include <cassert>
#include <cmath>
#include <stdexcept>
#include <unordered_set>
#include <vector>

Go to the source code of this file.

Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::tree

Functions
utils::Matrix< double >	edge_balances (BalanceData const &data, bool reverse_signs=false)
	Calculate edge balances using the Isometric Log Ratio transformation. More...
utils::Matrix< double >	phylogenetic_ilr_transform (BalanceData const &data, bool reverse_signs=false)
	Calculate the Phylogenetic Isometric Log Ratio transformation. More...