function/genome_locus_set.cpp File Reference

#include "genesis/population/function/genome_locus_set.hpp"
#include "genesis/sequence/formats/fastx_input_stream.hpp"
#include "genesis/sequence/formats/fasta_reader.hpp"
#include "genesis/sequence/sequence.hpp"
#include "genesis/utils/math/bitvector.hpp"
#include "genesis/utils/text/char.hpp"
#include <cassert>
#include <cstring>
#include <stdexcept>

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Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::population

Functions
GenomeLocusSet	read_mask_fasta (std::shared_ptr< utils::BaseInputSource > source, size_t mask_min=0, bool invert=false)
	Read an input source as a mask fasta file, and return its content as a GenomeLocusSet. More...
genesis::sequence::SequenceDict	reference_locus_set_to_dict (GenomeLocusSet const &set)