fastx_input_stream.hpp File Reference

#include "genesis/sequence/formats/fasta_reader.hpp"
#include "genesis/sequence/formats/fastq_reader.hpp"
#include "genesis/sequence/sequence.hpp"
#include "genesis/utils/core/std.hpp"
#include "genesis/utils/io/input_source.hpp"
#include "genesis/utils/io/input_stream.hpp"
#include <cassert>
#include <cstddef>
#include <iterator>
#include <memory>
#include <sstream>

Go to the source code of this file.

Classes
class	FastxInputStream< Reader >
	Stream through an input source and parse it as Fasta or Fastq sequences. More...
class	FastxInputStream< Reader >
	Stream through an input source and parse it as Fasta or Fastq sequences. More...
class	FastxInputStream< Reader >::Iterator
	Internal iterator over the sequences. More...

Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::sequence

Typedefs
using	FastaInputStream = FastxInputStream< FastaReader >
using	FastqInputStream = FastxInputStream< FastqReader >