diversity_pool_processor.hpp File Reference

#include "genesis/population/filter/variant_filter.hpp"
#include "genesis/population/function/diversity_pool_calculator.hpp"
#include "genesis/population/function/window_average.hpp"
#include "genesis/population/genome_locus_set.hpp"
#include "genesis/population/variant.hpp"
#include "genesis/population/window/base_window.hpp"
#include "genesis/utils/core/options.hpp"
#include "genesis/utils/core/std.hpp"
#include "genesis/utils/threading/thread_functions.hpp"
#include "genesis/utils/threading/thread_pool.hpp"
#include <algorithm>
#include <cassert>
#include <memory>
#include <stdexcept>
#include <string>
#include <utility>
#include <vector>

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Classes
class	DiversityPoolProcessor
	Helper class to iterate over Variants and process the samples (SampleCounts), using a set of DiversityPoolCalculator instances, one for each sample. More...

Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::population

Functions
DiversityPoolProcessor	make_diversity_pool_processor (WindowAveragePolicy window_average_policy, DiversityPoolSettings const &settings, std::vector< size_t > const &pool_sizes)
	Create an DiversityPoolProcessor to compute diversity for all samples. More...