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A library for working with phylogenetic and population genetic data.
v0.32.0 |
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A library for working with phylogenetic and population genetic data.
v0.32.0 |
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#include "genesis/utils/core/algorithm.hpp"#include "genesis/utils/containers/matrix.hpp"#include "genesis/utils/math/common.hpp"#include "genesis/utils/math/ranking.hpp"#include <algorithm>#include <cassert>#include <cmath>#include <cstddef>#include <functional>#include <limits>#include <stdexcept>#include <utility>#include <vector>Go to the source code of this file.
Namespaces | |
| genesis | |
| Container namespace for all symbols of genesis in order to keep them separate when used as a library. | |
| genesis::utils | |
Functions | |
| template<class ForwardIterator > | |
| double | aitchison_norm (ForwardIterator first, ForwardIterator last) |
| Calculate the Aitchison norm of a range of positive numbers. More... | |
| double | aitchison_norm (std::vector< double > const &vec) |
Calculate the Aitchison norm of a std::vector of double elements. More... | |
| template<class ForwardIteratorA , class ForwardIteratorB > | |
| double | euclidean_distance (ForwardIteratorA first_a, ForwardIteratorA last_a, ForwardIteratorB first_b, ForwardIteratorB last_b) |
| Calculate the Euclidean norm (L2 norm) distance between two (mathematical) vectors. More... | |
| double | euclidean_distance (std::vector< double > const &vec_a, std::vector< double > const &vec_b) |
Calculate the Euclidean norm (L2 norm) distance between two vectors of double elements. More... | |
| Matrix< double > | euclidean_distance_matrix (Matrix< double > const &data) |
| Calculate the pairwise euclidean distance matrix between the rows of a given matrix. More... | |
| template<class ForwardIterator > | |
| double | euclidean_norm (ForwardIterator first, ForwardIterator last) |
| Calculate the Euclidean norm (L2 norm) of a range of numbers. More... | |
| double | euclidean_norm (std::vector< double > const &vec) |
Calculate the Euclidean norm (L2 norm) of a std::vector of double elements. More... | |
| template<class ForwardIteratorA , class ForwardIteratorB > | |
| double | manhattan_distance (ForwardIteratorA first_a, ForwardIteratorA last_a, ForwardIteratorB first_b, ForwardIteratorB last_b) |
| Calculate the Manhattan norm (L1 norm) distance between two (mathematical) vectors. More... | |
| double | manhattan_distance (std::vector< double > const &vec_a, std::vector< double > const &vec_b) |
Calculate the Manhattan norm (L1 norm) distance between two vectors of double elements. More... | |
| Matrix< double > | manhattan_distance_matrix (Matrix< double > const &data) |
| Calculate the pairwise manhatten distance matrix between the rows of a given matrix. More... | |
| template<class ForwardIterator > | |
| double | manhattan_norm (ForwardIterator first, ForwardIterator last) |
| Calculate the Manhattan norm (L1 norm) of a range of numbers. More... | |
| double | manhattan_norm (std::vector< double > const &vec) |
Calculate the Manhattan norm (L1 norm) of a std::vector of double elements. More... | |
| template<class ForwardIteratorA , class ForwardIteratorB > | |
| double | maximum_distance (ForwardIteratorA first_a, ForwardIteratorA last_a, ForwardIteratorB first_b, ForwardIteratorB last_b) |
| Calculate the Maximum norm (infinity norm) distance between two (mathematical) vectors. More... | |
| double | maximum_distance (std::vector< double > const &vec_a, std::vector< double > const &vec_b) |
Calculate the Maximum norm (infinity norm) distance between two vectors of double elements. More... | |
| Matrix< double > | maximum_distance_matrix (Matrix< double > const &data) |
| Calculate the pairwise maximum distance matrix between the rows of a given matrix. More... | |
| template<class ForwardIterator > | |
| double | maximum_norm (ForwardIterator first, ForwardIterator last) |
| Calculate the Maximum norm (infinity norm) of a range of numbers. More... | |
| double | maximum_norm (std::vector< double > const &vec) |
Calculate the Maximum norm (infinity norm) of a std::vector of double elements. More... | |
| template<class ForwardIterator > | |
| double | p_norm (ForwardIterator first, ForwardIterator last, double p=2.0) |
| Calculate the p-norm of a range of numbers. More... | |
| double | p_norm (std::vector< double > const &vec, double p=2.0) |
Calculate the p-norm of a std::vector of double elements. More... | |
| template<class ForwardIteratorA , class ForwardIteratorB > | |
| double | p_norm_distance (ForwardIteratorA first_a, ForwardIteratorA last_a, ForwardIteratorB first_b, ForwardIteratorB last_b, double p=2.0) |
| Calculate the p-norm distance between two (mathematical) vectors. More... | |
| double | p_norm_distance (std::vector< double > const &vec_a, std::vector< double > const &vec_b, double p=2.0) |
Calculate the p-norm distance between two vectors of double elements. More... | |
| Matrix< double > | p_norm_distance_matrix (Matrix< double > const &data, double p=2.0) |
| Calculate the pairwise distance matrix between the rows of a given matrix. More... | |
1.8.17