A library for working with phylogenetic and population genetic data.
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Dataframe Class Reference

#include <genesis/utils/containers/dataframe.hpp>

Detailed Description

Definition at line 59 of file containers/dataframe.hpp.

Public Member Functions

 Dataframe ()=default
 
 Dataframe (Dataframe &&)=default
 
 Dataframe (Dataframe const &other)
 
 ~Dataframe ()=default
 
template<class T >
Column< T > & add_col (std::string const &name)
 
template<class T >
Column< T > & add_col (std::string const &name, std::vector< T > &&init)
 
template<class T >
Column< T > & add_col (std::string const &name, std::vector< T > const &init)
 
template<class T >
Column< T > & add_col (std::string const &name, T const &init)
 
self_type & add_row (std::string const &name)
 
template<class T >
Column< T > & add_unnamed_col ()
 
template<class T >
Column< T > & add_unnamed_col (std::vector< T > &&init)
 
template<class T >
Column< T > & add_unnamed_col (std::vector< T > const &init)
 
template<class T >
Column< T > & add_unnamed_col (T const &init)
 
self_type & add_unnamed_row ()
 
reference at (size_type col_index)
 
const_reference at (size_type col_index) const
 
reference at (std::string const &col_name)
 
const_reference at (std::string const &col_name) const
 
iterator begin ()
 
const_iterator begin () const
 
const_iterator cbegin ()
 
const_iterator cend ()
 
self_type & clear ()
 
self_type & clear_cols ()
 
self_type & clear_rows ()
 
size_t col_index (std::string const &col_name) const
 
std::string const & col_name (size_type col_index) const
 
self_type & col_name (size_type col_index, std::string const &value)
 
std::vector< std::string > const & col_names () const
 
size_type cols () const
 
bool empty () const
 
iterator end ()
 
const_iterator end () const
 
bool has_col_name (std::string const &col_name) const
 
bool has_row_name (std::string const &row_name) const
 
bool has_unnamed_cols () const
 
bool has_unnamed_rows () const
 
Dataframe & operator= (Dataframe &&)=default
 
Dataframe & operator= (Dataframe const &other)
 
reference operator[] (size_type col_index)
 
const_reference operator[] (size_type col_index) const
 
reference operator[] (std::string const &col_name)
 
const_reference operator[] (std::string const &col_name) const
 
self_type & remove_col (size_type col_index)
 
self_type & remove_col (std::string const &col_name)
 
self_type & remove_row (size_type row_index)
 
self_type & remove_row (std::string const &row_name)
 
template<class T >
Column< T > & replace_col (size_type at_index)
 
template<class T >
Column< T > & replace_col (size_type at_index, std::vector< T > &&init)
 
template<class T >
Column< T > & replace_col (size_type at_index, std::vector< T > const &init)
 
template<class T >
Column< T > & replace_col (size_type at_index, T const &init)
 
template<class T >
Column< T > & replace_col (std::string const &at_name)
 
template<class T >
Column< T > & replace_col (std::string const &at_name, std::vector< T > &&init)
 
template<class T >
Column< T > & replace_col (std::string const &at_name, std::vector< T > const &init)
 
template<class T >
Column< T > & replace_col (std::string const &at_name, T const &init)
 
size_t row_index (std::string const &row_name) const
 
std::string const & row_name (size_type row_index) const
 
self_type & row_name (size_type row_index, std::string const &value)
 
std::vector< std::string > const & row_names () const
 
size_type rows () const
 

Public Types

using const_iterator = utils::DereferenceIterator< container_type::const_iterator >
 
using const_pointer = value_type const *
 
using const_reference = value_type const &
 
using container_type = std::vector< std::unique_ptr< value_type > >
 
using iterator = utils::DereferenceIterator< container_type::iterator >
 
using pointer = value_type *
 
using reference = value_type &
 
using self_type = Dataframe
 
using size_type = size_t
 
using value_type = ColumnBase
 

Classes

class  Column
 
class  ColumnBase
 

Friends

void swap (self_type &lhs, self_type &rhs)
 
bool validate (Dataframe const &)
 Helper function to validate internal invariants. More...
 

Constructor & Destructor Documentation

◆ Dataframe() [1/3]

Dataframe ( )
default

◆ ~Dataframe()

~Dataframe ( )
default

◆ Dataframe() [2/3]

Dataframe ( Dataframe const &  other)
inline

Definition at line 514 of file containers/dataframe.hpp.

◆ Dataframe() [3/3]

Dataframe ( Dataframe &&  )
default

Member Function Documentation

◆ add_col() [1/4]

Column<T>& add_col ( std::string const &  name)
inline

Definition at line 809 of file containers/dataframe.hpp.

◆ add_col() [2/4]

Column<T>& add_col ( std::string const &  name,
std::vector< T > &&  init 
)
inline

Definition at line 848 of file containers/dataframe.hpp.

◆ add_col() [3/4]

Column<T>& add_col ( std::string const &  name,
std::vector< T > const &  init 
)
inline

Definition at line 841 of file containers/dataframe.hpp.

◆ add_col() [4/4]

Column<T>& add_col ( std::string const &  name,
T const &  init 
)
inline

Definition at line 831 of file containers/dataframe.hpp.

◆ add_row()

self_type& add_row ( std::string const &  name)
inline

Definition at line 878 of file containers/dataframe.hpp.

◆ add_unnamed_col() [1/4]

Column<T>& add_unnamed_col ( )
inline

Definition at line 763 of file containers/dataframe.hpp.

◆ add_unnamed_col() [2/4]

Column<T>& add_unnamed_col ( std::vector< T > &&  init)
inline

Definition at line 791 of file containers/dataframe.hpp.

◆ add_unnamed_col() [3/4]

Column<T>& add_unnamed_col ( std::vector< T > const &  init)
inline

Definition at line 784 of file containers/dataframe.hpp.

◆ add_unnamed_col() [4/4]

Column<T>& add_unnamed_col ( T const &  init)
inline

Definition at line 774 of file containers/dataframe.hpp.

◆ add_unnamed_row()

self_type& add_unnamed_row ( )
inline

Definition at line 866 of file containers/dataframe.hpp.

◆ at() [1/4]

reference at ( size_type  col_index)
inline

Definition at line 652 of file containers/dataframe.hpp.

◆ at() [2/4]

const_reference at ( size_type  col_index) const
inline

Definition at line 657 of file containers/dataframe.hpp.

◆ at() [3/4]

reference at ( std::string const &  col_name)
inline

Definition at line 662 of file containers/dataframe.hpp.

◆ at() [4/4]

const_reference at ( std::string const &  col_name) const
inline

Definition at line 667 of file containers/dataframe.hpp.

◆ begin() [1/2]

iterator begin ( )
inline

Definition at line 578 of file containers/dataframe.hpp.

◆ begin() [2/2]

const_iterator begin ( ) const
inline

Definition at line 583 of file containers/dataframe.hpp.

◆ cbegin()

const_iterator cbegin ( )
inline

Definition at line 598 of file containers/dataframe.hpp.

◆ cend()

const_iterator cend ( )
inline

Definition at line 603 of file containers/dataframe.hpp.

◆ clear()

self_type& clear ( )
inline

Definition at line 1012 of file containers/dataframe.hpp.

◆ clear_cols()

self_type& clear_cols ( )
inline

Definition at line 1032 of file containers/dataframe.hpp.

◆ clear_rows()

self_type& clear_rows ( )
inline

Definition at line 1022 of file containers/dataframe.hpp.

◆ col_index()

size_t col_index ( std::string const &  col_name) const
inline

Definition at line 730 of file containers/dataframe.hpp.

◆ col_name() [1/2]

std::string const& col_name ( size_type  col_index) const
inline

Definition at line 738 of file containers/dataframe.hpp.

◆ col_name() [2/2]

self_type& col_name ( size_type  col_index,
std::string const &  value 
)
inline

Definition at line 743 of file containers/dataframe.hpp.

◆ col_names()

std::vector<std::string> const& col_names ( ) const
inline

Definition at line 753 of file containers/dataframe.hpp.

◆ cols()

size_type cols ( ) const
inline

Definition at line 617 of file containers/dataframe.hpp.

◆ empty()

bool empty ( ) const
inline

Definition at line 623 of file containers/dataframe.hpp.

◆ end() [1/2]

iterator end ( )
inline

Definition at line 588 of file containers/dataframe.hpp.

◆ end() [2/2]

const_iterator end ( ) const
inline

Definition at line 593 of file containers/dataframe.hpp.

◆ has_col_name()

bool has_col_name ( std::string const &  col_name) const
inline

Definition at line 717 of file containers/dataframe.hpp.

◆ has_row_name()

bool has_row_name ( std::string const &  row_name) const
inline

Definition at line 676 of file containers/dataframe.hpp.

◆ has_unnamed_cols()

bool has_unnamed_cols ( ) const
inline

Definition at line 725 of file containers/dataframe.hpp.

◆ has_unnamed_rows()

bool has_unnamed_rows ( ) const
inline

Definition at line 684 of file containers/dataframe.hpp.

◆ operator=() [1/2]

Dataframe& operator= ( Dataframe &&  )
default

◆ operator=() [2/2]

Dataframe& operator= ( Dataframe const &  other)
inline

Definition at line 531 of file containers/dataframe.hpp.

◆ operator[]() [1/4]

reference operator[] ( size_type  col_index)
inline

Definition at line 632 of file containers/dataframe.hpp.

◆ operator[]() [2/4]

const_reference operator[] ( size_type  col_index) const
inline

Definition at line 637 of file containers/dataframe.hpp.

◆ operator[]() [3/4]

reference operator[] ( std::string const &  col_name)
inline

Definition at line 642 of file containers/dataframe.hpp.

◆ operator[]() [4/4]

const_reference operator[] ( std::string const &  col_name) const
inline

Definition at line 647 of file containers/dataframe.hpp.

◆ remove_col() [1/2]

self_type& remove_col ( size_type  col_index)
inline

Definition at line 1040 of file containers/dataframe.hpp.

◆ remove_col() [2/2]

self_type& remove_col ( std::string const &  col_name)
inline

Definition at line 1072 of file containers/dataframe.hpp.

◆ remove_row() [1/2]

self_type& remove_row ( size_type  row_index)
inline

Definition at line 1080 of file containers/dataframe.hpp.

◆ remove_row() [2/2]

self_type& remove_row ( std::string const &  row_name)
inline

Definition at line 1107 of file containers/dataframe.hpp.

◆ replace_col() [1/8]

Column<T>& replace_col ( size_type  at_index)
inline

Definition at line 907 of file containers/dataframe.hpp.

◆ replace_col() [2/8]

Column<T>& replace_col ( size_type  at_index,
std::vector< T > &&  init 
)
inline

Definition at line 939 of file containers/dataframe.hpp.

◆ replace_col() [3/8]

Column<T>& replace_col ( size_type  at_index,
std::vector< T > const &  init 
)
inline

Definition at line 932 of file containers/dataframe.hpp.

◆ replace_col() [4/8]

Column<T>& replace_col ( size_type  at_index,
T const &  init 
)
inline

Definition at line 922 of file containers/dataframe.hpp.

◆ replace_col() [5/8]

Column<T>& replace_col ( std::string const &  at_name)
inline

Definition at line 957 of file containers/dataframe.hpp.

◆ replace_col() [6/8]

Column<T>& replace_col ( std::string const &  at_name,
std::vector< T > &&  init 
)
inline

Definition at line 991 of file containers/dataframe.hpp.

◆ replace_col() [7/8]

Column<T>& replace_col ( std::string const &  at_name,
std::vector< T > const &  init 
)
inline

Definition at line 984 of file containers/dataframe.hpp.

◆ replace_col() [8/8]

Column<T>& replace_col ( std::string const &  at_name,
T const &  init 
)
inline

Definition at line 974 of file containers/dataframe.hpp.

◆ row_index()

size_t row_index ( std::string const &  row_name) const
inline

Definition at line 689 of file containers/dataframe.hpp.

◆ row_name() [1/2]

std::string const& row_name ( size_type  row_index) const
inline

Definition at line 697 of file containers/dataframe.hpp.

◆ row_name() [2/2]

self_type& row_name ( size_type  row_index,
std::string const &  value 
)
inline

Definition at line 702 of file containers/dataframe.hpp.

◆ row_names()

std::vector<std::string> const& row_names ( ) const
inline

Definition at line 712 of file containers/dataframe.hpp.

◆ rows()

size_type rows ( ) const
inline

Definition at line 612 of file containers/dataframe.hpp.

Friends And Related Function Documentation

◆ swap

void swap ( self_type &  lhs,
self_type &  rhs 
)
friend

Definition at line 549 of file containers/dataframe.hpp.

◆ validate

bool validate ( Dataframe const &  )
friend

Helper function to validate internal invariants.

Located in genesis/utils/containers/dataframe/operators.hpp

Definition at line 404 of file utils/containers/dataframe/operators.cpp.

Member Typedef Documentation

◆ const_iterator

using const_iterator = utils::DereferenceIterator< container_type::const_iterator >

Definition at line 503 of file containers/dataframe.hpp.

◆ const_pointer

using const_pointer = value_type const*

Definition at line 500 of file containers/dataframe.hpp.

◆ const_reference

using const_reference = value_type const&

Definition at line 498 of file containers/dataframe.hpp.

◆ container_type

using container_type = std::vector< std::unique_ptr< value_type > >

Definition at line 495 of file containers/dataframe.hpp.

◆ iterator

using iterator = utils::DereferenceIterator< container_type::iterator >

Definition at line 502 of file containers/dataframe.hpp.

◆ pointer

using pointer = value_type*

Definition at line 499 of file containers/dataframe.hpp.

◆ reference

using reference = value_type&

Definition at line 497 of file containers/dataframe.hpp.

◆ self_type

using self_type = Dataframe

Definition at line 493 of file containers/dataframe.hpp.

◆ size_type

using size_type = size_t

Definition at line 505 of file containers/dataframe.hpp.

◆ value_type

using value_type = ColumnBase

Definition at line 494 of file containers/dataframe.hpp.

The documentation for this class was generated from the following file: