taxonomy/functions/tree.hpp File Reference

#include "genesis/tree/tree.hpp"
#include <string>
#include <unordered_map>

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Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::taxonomy

Functions
tree::Tree	taxonomy_to_tree (std::unordered_map< std::string, Taxopath > const &taxon_map, bool keep_singleton_inner_nodes=false, bool keep_inner_node_names=false, int max_level=-1)
	Turn a list of Taxa into a (possibly multifurcating) Tree. More...
tree::Tree	taxonomy_to_tree (Taxonomy const &taxonomy, bool keep_singleton_inner_nodes=false, bool keep_inner_node_names=false, int max_level=-1)
	Turn a Taxonomy into a (possibly multifurcating) Tree. More...
tree::Tree	taxonomy_to_tree (Taxonomy const &taxonomy, std::unordered_map< std::string, Taxopath > const &extra_taxa, bool keep_singleton_inner_nodes=false, bool keep_inner_node_names=false, int max_level=-1, bool add_extra_taxa_parents=true)
	Turn a Taxonomy into a (possibly multifurcating) Tree, and allow to add extra tips to it. More...