A library for working with phylogenetic data.
v0.25.0
SimplePileupReader::Record Struct Reference

#include <genesis/population/formats/simple_pileup_reader.hpp>

Detailed Description

Single line/record from a pileup file.

A line consists of a chromosome and position, the reference base at that position, as well as one or more Samples, that is, information on reads (and optionally, their quality scores) that cover that position. See Sample for details on the latter.

Definition at line 141 of file simple_pileup_reader.hpp.

Public Attributes

std::string chromosome
 
size_t position
 
char reference_base
 
std::vector< Samplesamples
 

Member Data Documentation

◆ chromosome

std::string chromosome

Definition at line 143 of file simple_pileup_reader.hpp.

◆ position

size_t position

Definition at line 144 of file simple_pileup_reader.hpp.

◆ reference_base

char reference_base

Definition at line 145 of file simple_pileup_reader.hpp.

◆ samples

std::vector<Sample> samples

Definition at line 146 of file simple_pileup_reader.hpp.


The documentation for this struct was generated from the following file: