Detailed Description

Settings used by different pool-sequencing corrected diversity statistics.

These settings are used by DiversityPoolCalculator, and for example by theta_pi_pool(), theta_watterson_pool(), and tajima_d_pool(), in order to have them in a central place, and avoid ordering confusion of function arguments, that would result from having to provide them individually.

Note in particular the setting tajima_denominator_policy, which controls how we correct the denominator the computation of Tajima's D.

Public Attributes
size_t	max_read_depth = 0

size_t	min_count = 0

size_t	min_read_depth = 0

TajimaDenominatorPolicy	tajima_denominator_policy = TajimaDenominatorPolicy::kUncorrected