sequence.hpp

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#ifndef GENESIS_SEQUENCE_H_
#define GENESIS_SEQUENCE_H_
 
/*
    Genesis - A toolkit for working with phylogenetic data.
    Copyright (C) 2014-2024 Lucas Czech
 
    This program is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.
 
    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.
 
    You should have received a copy of the GNU General Public License
    along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
    Contact:
    Lucas Czech <lucas.czech@sund.ku.dk>
    University of Copenhagen, Globe Institute, Section for GeoGenetics
    Oster Voldgade 5-7, 1350 Copenhagen K, Denmark
*/
 
#include "genesis/sequence/counts.hpp"
#include "genesis/sequence/formats/fasta_reader.hpp"
#include "genesis/sequence/formats/fasta_writer.hpp"
#include "genesis/sequence/formats/fastq_reader.hpp"
#include "genesis/sequence/formats/fastq_writer.hpp"
#include "genesis/sequence/formats/fastx_input_stream.hpp"
#include "genesis/sequence/formats/fastx_input_view_stream.hpp"
#include "genesis/sequence/formats/fastx_output_stream.hpp"
#include "genesis/sequence/formats/phylip_reader.hpp"
#include "genesis/sequence/formats/phylip_writer.hpp"
#include "genesis/sequence/functions/codes.hpp"
#include "genesis/sequence/functions/consensus.hpp"
#include "genesis/sequence/functions/dict.hpp"
#include "genesis/sequence/functions/entropy.hpp"
#include "genesis/sequence/functions/functions.hpp"
#include "genesis/sequence/functions/labels.hpp"
#include "genesis/sequence/functions/quality.hpp"
#include "genesis/sequence/functions/signatures.hpp"
#include "genesis/sequence/functions/signature_specifications.hpp"
#include "genesis/sequence/functions/stats.hpp"
#include "genesis/sequence/printers/bitmap.hpp"
#include "genesis/sequence/printers/simple.hpp"
#include "genesis/sequence/reference_genome.hpp"
#include "genesis/sequence/sequence_dict.hpp"
#include "genesis/sequence/sequence.hpp"
#include "genesis/sequence/sequence_set.hpp"
 
#endif // include guard