A library for working with phylogenetic and population genetic data.
v0.27.0
sequence.hpp
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#ifndef GENESIS_SEQUENCE_H_
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#define GENESIS_SEQUENCE_H_
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/*
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Genesis - A toolkit for working with phylogenetic data.
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Copyright (C) 2014-2022 Lucas Czech
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This program is free software: you can redistribute it and/or modify
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it under the terms of the GNU General Public License as published by
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the Free Software Foundation, either version 3 of the License, or
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(at your option) any later version.
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This program is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.
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You should have received a copy of the GNU General Public License
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along with this program. If not, see <http://www.gnu.org/licenses/>.
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Contact:
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Lucas Czech <lczech@carnegiescience.edu>
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Department of Plant Biology, Carnegie Institution For Science
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260 Panama Street, Stanford, CA 94305, USA
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*/
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#include "
genesis/sequence/counts.hpp
"
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#include "
genesis/sequence/formats/fasta_input_iterator.hpp
"
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#include "
genesis/sequence/formats/fasta_output_iterator.hpp
"
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#include "
genesis/sequence/formats/fasta_reader.hpp
"
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#include "
genesis/sequence/formats/fasta_writer.hpp
"
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#include "
genesis/sequence/formats/fastq_input_iterator.hpp
"
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#include "
genesis/sequence/formats/fastq_output_iterator.hpp
"
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#include "
genesis/sequence/formats/fastq_reader.hpp
"
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#include "
genesis/sequence/formats/fastq_writer.hpp
"
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#include "
genesis/sequence/formats/phylip_reader.hpp
"
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#include "
genesis/sequence/formats/phylip_writer.hpp
"
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#include "
genesis/sequence/functions/codes.hpp
"
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#include "
genesis/sequence/functions/consensus.hpp
"
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#include "
genesis/sequence/functions/entropy.hpp
"
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#include "
genesis/sequence/functions/functions.hpp
"
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#include "
genesis/sequence/functions/labels.hpp
"
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#include "
genesis/sequence/functions/quality.hpp
"
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#include "
genesis/sequence/functions/signatures.hpp
"
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#include "
genesis/sequence/functions/signature_specifications.hpp
"
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#include "
genesis/sequence/functions/stats.hpp
"
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#include "
genesis/sequence/printers/bitmap.hpp
"
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#include "
genesis/sequence/printers/simple.hpp
"
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#include "
genesis/sequence/sequence.hpp
"
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#include "
genesis/sequence/sequence_set.hpp
"
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#endif // include guard
fastq_reader.hpp
fasta_reader.hpp
stats.hpp
signatures.hpp
fastq_input_iterator.hpp
counts.hpp
labels.hpp
sequence_set.hpp
signature_specifications.hpp
fasta_writer.hpp
fastq_writer.hpp
consensus.hpp
fastq_output_iterator.hpp
fasta_input_iterator.hpp
functions.hpp
fasta_output_iterator.hpp
bitmap.hpp
entropy.hpp
phylip_reader.hpp
simple.hpp
phylip_writer.hpp
sequence.hpp
codes.hpp
quality.hpp
lib
genesis
sequence.hpp
Generated on Sat Jun 4 2022 17:08:39 for genesis by
1.8.17