sam_flags.cpp File Reference

#include "genesis/population/formats/sam_flags.hpp"
#include "genesis/utils/core/algorithm.hpp"
#include "genesis/utils/text/string.hpp"
#include <cassert>
#include <cstdint>
#include <cstring>
#include <stdexcept>
#include <unordered_map>
#include <htslib/sam.h>

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Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::population

Functions
std::string	sam_flag_to_string (int flags)
	Turn a set of flags for sam/bam/cram reads into their textual representation. More...
int	string_to_sam_flag (std::string const &value)
	Parse a string as a set of flags for sam/bam/cram reads. More...

Variables
static const std::unordered_map< std::string, int >	sam_flag_name_to_int_
	Map from sam flags to their numerical value, for different types of naming of the flags. More...