genome_region.cpp File Reference

#include "genesis/population/functions/genome_region.hpp"
#include "genesis/utils/text/convert.hpp"
#include "genesis/utils/text/string.hpp"
#include <algorithm>
#include <cassert>
#include <iostream>
#include <stdexcept>

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Namespaces
	genesis
	Container namespace for all symbols of genesis in order to keep them separate when used as a library.
	genesis::population

Functions
bool	is_covered (GenomeRegion const &region, std::string const &chromosome, size_t position)
	Test whether the chromosome/position is within a given genomic region. More...
bool	is_covered (GenomeRegion const &region, VcfRecord const &variant)
bool	is_covered (GenomeRegionList const &regions, std::string const &chromosome, size_t position)
	Test whether the chromosome/position is within a given list of genomic regions. More...
bool	is_covered (GenomeRegionList const &regions, VcfRecord const &variant)
bool	operator!= (GenomeRegion const &a, GenomeRegion const &b)
	Inequality comparison (!=) for two GenomeRegions. More...
std::ostream &	operator<< (std::ostream &os, GenomeRegion const &region)
bool	operator== (GenomeRegion const &a, GenomeRegion const &b)
	Equality comparison (!=) for two GenomeRegions. More...
GenomeRegion	parse_genome_region (std::string const &region, bool zero_based=false, bool end_exclusive=false)
	Parse a genomic region. More...
GenomeRegionList	parse_genome_regions (std::string const &regions, bool zero_based=false, bool end_exclusive=false)
	Parse a set/list of genomic regions. More...
std::string	to_string (GenomeRegion const &region)